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The map label for this gene is nusB

Identifier: 153934479

GI number: 153934479

Start: 1943235

End: 1943666

Strand: Reverse

Name: nusB

Synonym: CLC_1830

Alternate gene names: 153934479

Gene position: 1943666-1943235 (Counterclockwise)

Preceding gene: 153937796

Following gene: 153936081

Centisome position: 51.69

GC content: 25.0

Gene sequence:

>432_bases
ATGAATAGAAGAAAATCAAGAGAAGTAGCCATGAGATTATTATTTCAAACTACATTAAATGGAGAAAACTTAGAGGAGGC
CCTAGAAAATTTAAAGGATGTTAGAGAATCTGAAGAGATTACAAAAGAAAAAGATTATGAATCTGTAGATTTAAAAGATG
TGGATATAGATTATGTTAAAAGAATAATAAAAGGTATAGAAGAAAACAAAGAAGAAATAGATGAAAAAATAAAAGGAAAT
TTAAAAAATTGGAAAATAGAAAGACTATCTAAAGTAGATTTATCTATACTTAGATTATGTACATATGAATTGAAATTTGA
AGAAGATATACCAAATAGGGTATCTGTAAATGAGGCTATAGAATTAGCTAAAAAATATTCAGGAGAAAAATCTGCAACTT
TTATAAATGGTGTTTTAGGTAAAATGATTTAA

Upstream 100 bases:

>100_bases
GTAGAGAATCAATATTCATAATAATATAAAAAATGTAAATAATAGTAGTATTTAGAGTTAAAATTTACAAAACCAAACAT
AGAAAATTAGGGAGGAAAAT

Downstream 100 bases:

>100_bases
AATTAATAAATATTTAAAAAGTGAAGAGCTTAGCTTTTCACTTTTAATATTAATAAAAAGGAAGATGTTTATGCATATTA
AAACTCTTACAGTTTCTCAG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRIIKGIEENKEEIDEKIKGN
LKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAIELAKKYSGEKSATFINGVLGKMI

Sequences:

>Translated_143_residues
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRIIKGIEENKEEIDEKIKGN
LKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAIELAKKYSGEKSATFINGVLGKMI
>Mature_143_residues
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRIIKGIEENKEEIDEKIKGN
LKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAIELAKKYSGEKSATFINGVLGKMI

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=92, Percent_Identity=41.304347826087, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_CLOB1 (A7FUU1)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384144.1
- ProteinModelPortal:   A7FUU1
- SMR:   A7FUU1
- STRING:   A7FUU1
- GeneID:   5395333
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_1823
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   MELLFGM
- ProtClustDB:   PRK00202
- BioCyc:   CBOT441770:CLB_1823-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16711; Mature: 16711

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVK
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
RIIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
ELAKKYSGEKSATFINGVLGKMI
HHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVK
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
RIIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
ELAKKYSGEKSATFINGVLGKMI
HHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA