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The map label for this gene is ymfN [H]

Identifier: 153933850

GI number: 153933850

Start: 3125326

End: 3126972

Strand: Reverse

Name: ymfN [H]

Synonym: CLB_2973

Alternate gene names: 153933850

Gene position: 3126972-3125326 (Counterclockwise)

Preceding gene: 153932734

Following gene: 153930816

Centisome position: 80.94

GC content: 30.54

Gene sequence:

>1647_bases
ATGATGACGAAATGTAAATTCAATAAATACATTGATGATTATATGGATAAAATATGCAGCGGTAAAATACCAGCATCTAA
AGAATTACATCAGGCCATGGATTATATTGAAGAAAAGTTAAGCAATTCTGATGTAATTATAAAACATGATATGATTGACA
AGGCGATAGAGCTTACCGAACGATACTTCGATATGAAGTTATTAGATTGGGAGCTTTTTATTTTTGCTCTAATTCATTGT
TACTATAAAAGTTCTGACATGGTTGTATTTGATGAATTTTTAATAGTTATGGGTAGAGGAAACGGGAAAAATGGATTTAT
AAGTCCAGTATCTTGGTACTTAACAACTCATTATCATGGAATCAAGGGATATAATGTGGACATTATAGCTAACTCAGAGG
ATCAAGCTGAGACAAGTTTTAATGATGTTTATGAAGTACTAGAGAAAACATGGAAGAAATCTAAAAAGTTTTTTACAAAA
ACAAAGGAAATAATAACCAACACTAAAACTAATTCTTATATAAAATATAATACCTCTAATGCTAAAACTAAAGATGGTAA
GCGTAGTGCTTGTCTTATTTTTGATGAAATACATGAATATGAAAATTATGATACTATAAAAGTCTTTACGAGTGGGTTCG
GTAAAAGAAAACACTCAAGAACATTTTACATAACCACTAATGGCTATGTTAGAGATGGGGTTCTAGATGAACAATTACAA
CTAGGCAAAGATGTTCTTGATGGGAAAATAAAGGATTTAGGTTTACTTCCTTTGATTTATAAAATAGATAAAAAAGAAGA
ATATAAAAATCCAGATATGTGGGTTAAAGCTAATCCATCATTACCTTATTTTACTGAGCTGCAAAAAGAAATGAAAAAAG
CATTTAAGAAAATGAAGTATCAAAATCATATAGCACTTGATTTTATGACTAAGAGAATGAACATGCCAGCACAGGATAAT
TTTACTGCAGCAGTTCCATGGGAAAAAATAATAAAAACTAACAGGACAATTCCATATAAAGATTTACAAGGTATGCAATG
CTTAGGTGCTCTTGACTATGCTATGGTAACTGACTTTGCTAGTTGTGGATTGCTATTTAAATACAATGGTTTAAGGTACT
GGGTTGAACATACTTTTGTATGTCATAAAGCTTTAGAGATAGAAAGTAGGCCTATTAAATTTCCTGTTAAAGAAATGGAA
CAACGAGGACTTATAACAATAGTAAAAGGAGATAGTATTACTCCGGATATAATAGCTAACTGGTTCTTAGAGCAACAGAA
AAAATATAATATCTTAAATATCTATGCAGATGATTATAGAGAAAAATTATTAAAAGCAAAATTTAATGAAGTTGGGCTAC
CTCTTCACACAGTAAGAAGTGGACCTATAACTCATGCAAAGGTAGCACCTCTTATAGAAAGTATTTTTGCTGAAGAACAA
ATGGTTTTTGGAGATAATCCAACAATGAGGTGGTATATAAACAATACTTATCAAGAGTTAGATAAGAAAGGAAATATTAC
TTATAAAAAAATAGAGCCAAAAACAAGAAAGACAGATGGTTTCTTTGCCCTCATACACGTACTTAGCAAGGACGAAGAAT
TGAAAGAGCAAACAGGGTATATGAGGTTAGATGTTCATACATATTAA

Upstream 100 bases:

>100_bases
AAAAATGATAGTATACCAGAACTCAACAAAACAAGTGCTCAAATGCTTAAGATTTTAGCAGAATTAGGCTTAAAACCATC
ACCAAAGGAAAATAGCGATA

Downstream 100 bases:

>100_bases
CATGAAAGGGGGTGAGGAATTGGGATAAGTAGTTGGTTTCTAAATCTATTTGGTAAAAATAAAATAGTTCAACTTGATGG
AGTGTACGGATCACTTGAAG

Product: putative phage terminase, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MMTKCKFNKYIDDYMDKICSGKIPASKELHQAMDYIEEKLSNSDVIIKHDMIDKAIELTERYFDMKLLDWELFIFALIHC
YYKSSDMVVFDEFLIVMGRGNGKNGFISPVSWYLTTHYHGIKGYNVDIIANSEDQAETSFNDVYEVLEKTWKKSKKFFTK
TKEIITNTKTNSYIKYNTSNAKTKDGKRSACLIFDEIHEYENYDTIKVFTSGFGKRKHSRTFYITTNGYVRDGVLDEQLQ
LGKDVLDGKIKDLGLLPLIYKIDKKEEYKNPDMWVKANPSLPYFTELQKEMKKAFKKMKYQNHIALDFMTKRMNMPAQDN
FTAAVPWEKIIKTNRTIPYKDLQGMQCLGALDYAMVTDFASCGLLFKYNGLRYWVEHTFVCHKALEIESRPIKFPVKEME
QRGLITIVKGDSITPDIIANWFLEQQKKYNILNIYADDYREKLLKAKFNEVGLPLHTVRSGPITHAKVAPLIESIFAEEQ
MVFGDNPTMRWYINNTYQELDKKGNITYKKIEPKTRKTDGFFALIHVLSKDEELKEQTGYMRLDVHTY

Sequences:

>Translated_548_residues
MMTKCKFNKYIDDYMDKICSGKIPASKELHQAMDYIEEKLSNSDVIIKHDMIDKAIELTERYFDMKLLDWELFIFALIHC
YYKSSDMVVFDEFLIVMGRGNGKNGFISPVSWYLTTHYHGIKGYNVDIIANSEDQAETSFNDVYEVLEKTWKKSKKFFTK
TKEIITNTKTNSYIKYNTSNAKTKDGKRSACLIFDEIHEYENYDTIKVFTSGFGKRKHSRTFYITTNGYVRDGVLDEQLQ
LGKDVLDGKIKDLGLLPLIYKIDKKEEYKNPDMWVKANPSLPYFTELQKEMKKAFKKMKYQNHIALDFMTKRMNMPAQDN
FTAAVPWEKIIKTNRTIPYKDLQGMQCLGALDYAMVTDFASCGLLFKYNGLRYWVEHTFVCHKALEIESRPIKFPVKEME
QRGLITIVKGDSITPDIIANWFLEQQKKYNILNIYADDYREKLLKAKFNEVGLPLHTVRSGPITHAKVAPLIESIFAEEQ
MVFGDNPTMRWYINNTYQELDKKGNITYKKIEPKTRKTDGFFALIHVLSKDEELKEQTGYMRLDVHTY
>Mature_548_residues
MMTKCKFNKYIDDYMDKICSGKIPASKELHQAMDYIEEKLSNSDVIIKHDMIDKAIELTERYFDMKLLDWELFIFALIHC
YYKSSDMVVFDEFLIVMGRGNGKNGFISPVSWYLTTHYHGIKGYNVDIIANSEDQAETSFNDVYEVLEKTWKKSKKFFTK
TKEIITNTKTNSYIKYNTSNAKTKDGKRSACLIFDEIHEYENYDTIKVFTSGFGKRKHSRTFYITTNGYVRDGVLDEQLQ
LGKDVLDGKIKDLGLLPLIYKIDKKEEYKNPDMWVKANPSLPYFTELQKEMKKAFKKMKYQNHIALDFMTKRMNMPAQDN
FTAAVPWEKIIKTNRTIPYKDLQGMQCLGALDYAMVTDFASCGLLFKYNGLRYWVEHTFVCHKALEIESRPIKFPVKEME
QRGLITIVKGDSITPDIIANWFLEQQKKYNILNIYADDYREKLLKAKFNEVGLPLHTVRSGPITHAKVAPLIESIFAEEQ
MVFGDNPTMRWYINNTYQELDKKGNITYKKIEPKTRKTDGFFALIHVLSKDEELKEQTGYMRLDVHTY

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 64149; Mature: 64149

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00690 DEAH_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTKCKFNKYIDDYMDKICSGKIPASKELHQAMDYIEEKLSNSDVIIKHDMIDKAIELTE
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
RYFDMKLLDWELFIFALIHCYYKSSDMVVFDEFLIVMGRGNGKNGFISPVSWYLTTHYHG
HHHCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCHHEEEEEEEECC
IKGYNVDIIANSEDQAETSFNDVYEVLEKTWKKSKKFFTKTKEIITNTKTNSYIKYNTSN
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
AKTKDGKRSACLIFDEIHEYENYDTIKVFTSGFGKRKHSRTFYITTNGYVRDGVLDEQLQ
CCCCCCCCCEEEEEHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEECCCCHHHHH
LGKDVLDGKIKDLGLLPLIYKIDKKEEYKNPDMWVKANPSLPYFTELQKEMKKAFKKMKY
HCHHHHCCCHHHCCCCHHEEEECCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
QNHIALDFMTKRMNMPAQDNFTAAVPWEKIIKTNRTIPYKDLQGMQCLGALDYAMVTDFA
CCCEEHEEHHHHCCCCCCCCEEEECCHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHH
SCGLLFKYNGLRYWVEHTFVCHKALEIESRPIKFPVKEMEQRGLITIVKGDSITPDIIAN
HCCEEEEECCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCCHHHHHH
WFLEQQKKYNILNIYADDYREKLLKAKFNEVGLPLHTVRSGPITHAKVAPLIESIFAEEQ
HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCC
MVFGDNPTMRWYINNTYQELDKKGNITYKKIEPKTRKTDGFFALIHVLSKDEELKEQTGY
EEECCCCEEEEEECCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHCCE
MRLDVHTY
EEEEEECC
>Mature Secondary Structure
MMTKCKFNKYIDDYMDKICSGKIPASKELHQAMDYIEEKLSNSDVIIKHDMIDKAIELTE
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
RYFDMKLLDWELFIFALIHCYYKSSDMVVFDEFLIVMGRGNGKNGFISPVSWYLTTHYHG
HHHCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCHHEEEEEEEECC
IKGYNVDIIANSEDQAETSFNDVYEVLEKTWKKSKKFFTKTKEIITNTKTNSYIKYNTSN
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
AKTKDGKRSACLIFDEIHEYENYDTIKVFTSGFGKRKHSRTFYITTNGYVRDGVLDEQLQ
CCCCCCCCCEEEEEHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEECCCCHHHHH
LGKDVLDGKIKDLGLLPLIYKIDKKEEYKNPDMWVKANPSLPYFTELQKEMKKAFKKMKY
HCHHHHCCCHHHCCCCHHEEEECCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
QNHIALDFMTKRMNMPAQDNFTAAVPWEKIIKTNRTIPYKDLQGMQCLGALDYAMVTDFA
CCCEEHEEHHHHCCCCCCCCEEEECCHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHH
SCGLLFKYNGLRYWVEHTFVCHKALEIESRPIKFPVKEMEQRGLITIVKGDSITPDIIAN
HCCEEEEECCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCCHHHHHH
WFLEQQKKYNILNIYADDYREKLLKAKFNEVGLPLHTVRSGPITHAKVAPLIESIFAEEQ
HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCC
MVFGDNPTMRWYINNTYQELDKKGNITYKKIEPKTRKTDGFFALIHVLSKDEELKEQTGY
EEECCCCEEEEEECCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHCCE
MRLDVHTY
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]