Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 153933017

GI number: 153933017

Start: 3071935

End: 3072435

Strand: Reverse

Name: ybeY [C]

Synonym: CLB_2912

Alternate gene names: 153933017

Gene position: 3072435-3071935 (Counterclockwise)

Preceding gene: 153932324

Following gene: 153933281

Centisome position: 79.53

GC content: 25.75

Gene sequence:

>501_bases
ATGATATATATAGATAATAGACAGAATAAAATAAAAGTAAATGAAGAGCTTGAAAATAAAATAAAAGAAATAATAGACTA
TGCATTAAAAGAGGAAAAGGTAAATATAGATTATGAAATAAGTGTGGTTTTTATAGATAACAATAGTATAAAAGAAATAA
ATAAAGACTATAGAAATATAGATAAAGCTACAGATGTATTATCCTTTCCAATGTTAGATTATGAGGATGGAGAAGTTTTT
AAAGATATATATTTAAACTATGAATTTGATGAAAGTGATCTAGATGAGGGAAATTTAGTTTTAGGAGATATAGCCCTTTC
TTTAGAGAAAGCAGAAGAACAAAGTAAAGAATTTGGTCACAGTTTTTTAAGAGAGACTTGCTATTTAACAATACATTCAG
TACTGCATCTCTTAGGATATGATCATATGGAAGAAGATGAGAAAGTTATAATGAGACAGAGAGAAGAAGAAATATTAAAA
AGCTTTAATTTACACAGGTAA

Upstream 100 bases:

>100_bases
TAGGACTAATAAGAGATGCTTTTTTGAAGGTCCTTATAAGTATATATCACCAAAGAATAGAATATCCAGAGGATAAATGG
ATAAGAGATAGGAGGATAAA

Downstream 100 bases:

>100_bases
AAATTCATTTTTTAACCTGTAAAGGATGGTGATTAGCCATGAAGGTAAATAAACTTTTGGATAGTTTTAATTATGCTATA
GATGGAATAATACATGCAGT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEDGEVF
KDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILK
SFNLHR

Sequences:

>Translated_166_residues
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEDGEVF
KDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILK
SFNLHR
>Mature_166_residues
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEDGEVF
KDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILK
SFNLHR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CLOB1 (A7FXK4)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001385208.1
- ProteinModelPortal:   A7FXK4
- SMR:   A7FXK4
- STRING:   A7FXK4
- GeneID:   5396567
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_2912
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- ProtClustDB:   PRK00016
- BioCyc:   CBOT441770:CLB_2912-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 19749; Mature: 19749

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNI
CEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHH
DKATDVLSFPMLDYEDGEVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGH
HHHHHHHHCCCCCCCCCHHHHHHHEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
SFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILKSFNLHR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNI
CEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHH
DKATDVLSFPMLDYEDGEVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGH
HHHHHHHHCCCCCCCCCHHHHHHHEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
SFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILKSFNLHR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA