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The map label for this gene is yddE [H]

Identifier: 153932402

GI number: 153932402

Start: 2256580

End: 2257428

Strand: Reverse

Name: yddE [H]

Synonym: CLB_2120

Alternate gene names: 153932402

Gene position: 2257428-2256580 (Counterclockwise)

Preceding gene: 153933376

Following gene: 153931544

Centisome position: 58.43

GC content: 29.8

Gene sequence:

>849_bases
ATGGAATATTTTCATGTTGATGTTTTTAGCAATGAAATTTTATATGGCAATGGATTAACTGTTGTTTTTTGTAATGAGGA
ATTAGAAGATAATCTTATGTTGAAATTAACACAAGAGTTTAAGCAATTTGAAACAATTTTTGTGAGAAGAATGGATAATA
GTATATTTAATGCAAGAATTTTTACAGTAGATGAAGAATTGGATTTTGCGGGGCATCCTATTTTGGGAGCAGCTGCTACT
ATTCATAGTAATATTTTTAGAAATGAAGAAGATATAGCAATTACATTTCAATTAAATCAAAAAACAATTATAGTTAATTC
AAAAAAGATAGAGGAGTATTATGAAGTACAAATGAATCAAGGAAAAGCGGAATTCCTCTGTGAAGTTTCAAAAGAGAAGA
GAAATAAATATGTACATGCATTGAACTTGTCAGAAGAGAATTTAAGCGAAGAATTTCCTATGGAAGTTGTATCAACAGGA
TTACCATACTTATTAGTACCATTAGCTTCAGGAATAGAGAATGCAAAAATAATTAGTTCTAAATTTGAAGAAATGTTAAA
AGAAGTAGGTGCTAAATTTGCTTATATATTTGATGTGAATTATATAGAAGGACGGACCTGGGATAATCAAGGAAACGTTG
AGGATGTTGCAACAGGAAGTGCAGCTGGACCATTAGGTGCATATTTATATAAGCATAATATTTTTAATGTAGGTCATGAG
ATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATATT
AGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAA

Upstream 100 bases:

>100_bases
GATGTTCTTTGAAAATTAAATAATGCGGTATTTGCACTATATGTTATAATTTTAGGTAAAATAAATGTTAATTATATTTT
TTATATAAGGAGGAATTAAA

Downstream 100 bases:

>100_bases
TAATAAACGTAAAAAATCGCATTATTCAAGAAATTGAATTTGCGATTTTTTATTGCGCAATCCAAATATATTGTAAAGTT
AACTGAATTTTTCCAACCAA

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MEYFHVDVFSNEILYGNGLTVVFCNEELEDNLMLKLTQEFKQFETIFVRRMDNSIFNARIFTVDEELDFAGHPILGAAAT
IHSNIFRNEEDIAITFQLNQKTIIVNSKKIEEYYEVQMNQGKAEFLCEVSKEKRNKYVHALNLSEENLSEEFPMEVVSTG
LPYLLVPLASGIENAKIISSKFEEMLKEVGAKFAYIFDVNYIEGRTWDNQGNVEDVATGSAAGPLGAYLYKHNIFNVGHE
IIINQGRFVGRPSKIKVSMSISEKEILVSGEVAILAKGTILL

Sequences:

>Translated_282_residues
MEYFHVDVFSNEILYGNGLTVVFCNEELEDNLMLKLTQEFKQFETIFVRRMDNSIFNARIFTVDEELDFAGHPILGAAAT
IHSNIFRNEEDIAITFQLNQKTIIVNSKKIEEYYEVQMNQGKAEFLCEVSKEKRNKYVHALNLSEENLSEEFPMEVVSTG
LPYLLVPLASGIENAKIISSKFEEMLKEVGAKFAYIFDVNYIEGRTWDNQGNVEDVATGSAAGPLGAYLYKHNIFNVGHE
IIINQGRFVGRPSKIKVSMSISEKEILVSGEVAILAKGTILL
>Mature_282_residues
MEYFHVDVFSNEILYGNGLTVVFCNEELEDNLMLKLTQEFKQFETIFVRRMDNSIFNARIFTVDEELDFAGHPILGAAAT
IHSNIFRNEEDIAITFQLNQKTIIVNSKKIEEYYEVQMNQGKAEFLCEVSKEKRNKYVHALNLSEENLSEEFPMEVVSTG
LPYLLVPLASGIENAKIISSKFEEMLKEVGAKFAYIFDVNYIEGRTWDNQGNVEDVATGSAAGPLGAYLYKHNIFNVGHE
IIINQGRFVGRPSKIKVSMSISEKEILVSGEVAILAKGTILL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=296, Percent_Identity=27.027027027027, Blast_Score=107, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31899; Mature: 31899

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYFHVDVFSNEILYGNGLTVVFCNEELEDNLMLKLTQEFKQFETIFVRRMDNSIFNARI
CCEEEEEEECCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
FTVDEELDFAGHPILGAAATIHSNIFRNEEDIAITFQLNQKTIIVNSKKIEEYYEVQMNQ
EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECHHHHHHHHHHCCC
GKAEFLCEVSKEKRNKYVHALNLSEENLSEEFPMEVVSTGLPYLLVPLASGIENAKIISS
CHHHHHHHHHHHHCCCEEEEEECCHHHCCHHCCHHHHHCCCCEEEHHHHCCCCCHHHHHH
KFEEMLKEVGAKFAYIFDVNYIEGRTWDNQGNVEDVATGSAAGPLGAYLYKHNIFNVGHE
HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCHHHCCCE
IIINQGRFVGRPSKIKVSMSISEKEILVSGEVAILAKGTILL
EEEECCEEECCCCEEEEEEEECCCEEEEECCEEEEECCEEEC
>Mature Secondary Structure
MEYFHVDVFSNEILYGNGLTVVFCNEELEDNLMLKLTQEFKQFETIFVRRMDNSIFNARI
CCEEEEEEECCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
FTVDEELDFAGHPILGAAATIHSNIFRNEEDIAITFQLNQKTIIVNSKKIEEYYEVQMNQ
EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECHHHHHHHHHHCCC
GKAEFLCEVSKEKRNKYVHALNLSEENLSEEFPMEVVSTGLPYLLVPLASGIENAKIISS
CHHHHHHHHHHHHCCCEEEEEECCHHHCCHHCCHHHHHCCCCEEEHHHHCCCCCHHHHHH
KFEEMLKEVGAKFAYIFDVNYIEGRTWDNQGNVEDVATGSAAGPLGAYLYKHNIFNVGHE
HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCHHHCCCE
IIINQGRFVGRPSKIKVSMSISEKEILVSGEVAILAKGTILL
EEEECCEEECCCCEEEEEEEECCCEEEEECCEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]