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The map label for this gene is 153931605

Identifier: 153931605

GI number: 153931605

Start: 2966169

End: 2966699

Strand: Reverse

Name: 153931605

Synonym: CLB_2817

Alternate gene names: NA

Gene position: 2966699-2966169 (Counterclockwise)

Preceding gene: 153933167

Following gene: 153933980

Centisome position: 76.79

GC content: 24.48

Gene sequence:

>531_bases
ATGCATCAACTTATTAAGAAATATAGAGAAGGTGACAATAAAGCATTACAAAAAATAATAGATAATTTTATTCCTCTTAT
TTTAAAGGAAGCTTCAAAGTATAAAATAAAATGTTATGATTATGAGGATTTAGTTCAACATGGATATTTATCTGTTATAA
AAGCTGCAAATATGTACAAGGGAGAAGATAAAAACTTTAAATTCTATTGTATTAAAGCTATAAAGCAAAACTACAAAGCC
CTTCTAAAAGGTGAAATAAAACATCATAGAGAAATACCAGAGGAAAAGGATATATATCCTTATGAATTTACTTTAGAGGA
TGAAATATTAGCCTATGAAAAAATAAAGGAAGTGTACAAAGCTTTAGATTATTTAACCCAGGATGAAAGGAACATAATAG
AAGGTTTTTATTTTAAGGATAACACTATAGAAAATATTGCTAAAGAGAATAATAAAAGTTATAACAATATAAGATACCAA
AAAGATAAGGTAATAAAAAAACTACAAAACACTTTGAAAAATCATATATAA

Upstream 100 bases:

>100_bases
CTTTAAAGGGACTTATCTTTATTTATACATAAAAGAATGAAAATATAATATATTAGATGTATAATATTGGTAATTATTCC
TTTAAGGCGGTGGTATGCTA

Downstream 100 bases:

>100_bases
ATATGAGTAGAGAAAATGTAACTCAGGTTCATATTTCATCTGAGTAAGTGATTCACATCAAATCCTAGATTTGGGTTCTC
TACTTAAAGGGTGGTGGGAA

Product: sigma-70 family RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma Factor RpoE-Like Protein

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MHQLIKKYREGDNKALQKIIDNFIPLILKEASKYKIKCYDYEDLVQHGYLSVIKAANMYKGEDKNFKFYCIKAIKQNYKA
LLKGEIKHHREIPEEKDIYPYEFTLEDEILAYEKIKEVYKALDYLTQDERNIIEGFYFKDNTIENIAKENNKSYNNIRYQ
KDKVIKKLQNTLKNHI

Sequences:

>Translated_176_residues
MHQLIKKYREGDNKALQKIIDNFIPLILKEASKYKIKCYDYEDLVQHGYLSVIKAANMYKGEDKNFKFYCIKAIKQNYKA
LLKGEIKHHREIPEEKDIYPYEFTLEDEILAYEKIKEVYKALDYLTQDERNIIEGFYFKDNTIENIAKENNKSYNNIRYQ
KDKVIKKLQNTLKNHI
>Mature_176_residues
MHQLIKKYREGDNKALQKIIDNFIPLILKEASKYKIKCYDYEDLVQHGYLSVIKAANMYKGEDKNFKFYCIKAIKQNYKA
LLKGEIKHHREIPEEKDIYPYEFTLEDEILAYEKIKEVYKALDYLTQDERNIIEGFYFKDNTIENIAKENNKSYNNIRYQ
KDKVIKKLQNTLKNHI

Specific function: Unknown

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21203; Mature: 21203

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQLIKKYREGDNKALQKIIDNFIPLILKEASKYKIKCYDYEDLVQHGYLSVIKAANMYK
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCC
GEDKNFKFYCIKAIKQNYKALLKGEIKHHREIPEEKDIYPYEFTLEDEILAYEKIKEVYK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
ALDYLTQDERNIIEGFYFKDNTIENIAKENNKSYNNIRYQKDKVIKKLQNTLKNHI
HHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHQLIKKYREGDNKALQKIIDNFIPLILKEASKYKIKCYDYEDLVQHGYLSVIKAANMYK
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCC
GEDKNFKFYCIKAIKQNYKALLKGEIKHHREIPEEKDIYPYEFTLEDEILAYEKIKEVYK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
ALDYLTQDERNIIEGFYFKDNTIENIAKENNKSYNNIRYQKDKVIKKLQNTLKNHI
HHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA