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The map label for this gene is yoeC [H]

Identifier: 153931381

GI number: 153931381

Start: 3128444

End: 3128989

Strand: Reverse

Name: yoeC [H]

Synonym: CLB_2976

Alternate gene names: 153931381

Gene position: 3128989-3128444 (Counterclockwise)

Preceding gene: 153934302

Following gene: 153931880

Centisome position: 80.99

GC content: 28.57

Gene sequence:

>546_bases
ATGAATTTTGTCGAGCCTATTCGTGATAAACAAAAGGTAAGGGATATCCAAGACTATTTAAAACAAACCAATCCAAGAAA
TTATATTATGTTTATAACTGGAGTTTACACAGGTCTTAGAATTTCAGATATATTAAAGCTTAAAGTTAAAGACGTTAAAA
ATAAAGAAGGGATATATCTAAGAGAAAAAAAGACTAGTAAACAAAATATTATAGCGCTAAATAAGCTTTTAATAAAAGAA
TATAAATGGTTTTGTGGTAATTTGGAAGGTTATGAGTACTTAATAAAAAGTAGAGAAGGTATTAATAAACCTTTAAGTAG
AGTAAGAGCTTATGAGATCATAAGAAAAGTTGGGAAAGATTTTGGAGTTGAGAATCTAGGAACTCATACAATGAGGAAGA
CATTCGGATATCATTACTATAAAAAGACGAAAGATATAGGAACACTAATGAATATGTTTAATCATAGTGCACCAAGTATT
ACGTTAAAGTACATTGGCATAAGTCAAGACACTATGAATAAAGCTAGAAGGGAATTCAATATTTGA

Upstream 100 bases:

>100_bases
GTAGAAAGGTAAAAAAACAAAATGCAACAGATAACTTAAAGGAATGCATGAAAGAAAAAGTTTATAAAAGAGTACATGGA
GCTATAAGGCAGGTGACAAA

Downstream 100 bases:

>100_bases
TATTGGATTTATTTTTTTATCTTAATAGTTTAACATAACGGGTGCGTGTTAAATTGATTTCCACTAAAGTGTATTAAAAC
ATTGAAAAATAAATACCTAA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNFVEPIRDKQKVRDIQDYLKQTNPRNYIMFITGVYTGLRISDILKLKVKDVKNKEGIYLREKKTSKQNIIALNKLLIKE
YKWFCGNLEGYEYLIKSREGINKPLSRVRAYEIIRKVGKDFGVENLGTHTMRKTFGYHYYKKTKDIGTLMNMFNHSAPSI
TLKYIGISQDTMNKARREFNI

Sequences:

>Translated_181_residues
MNFVEPIRDKQKVRDIQDYLKQTNPRNYIMFITGVYTGLRISDILKLKVKDVKNKEGIYLREKKTSKQNIIALNKLLIKE
YKWFCGNLEGYEYLIKSREGINKPLSRVRAYEIIRKVGKDFGVENLGTHTMRKTFGYHYYKKTKDIGTLMNMFNHSAPSI
TLKYIGISQDTMNKARREFNI
>Mature_181_residues
MNFVEPIRDKQKVRDIQDYLKQTNPRNYIMFITGVYTGLRISDILKLKVKDVKNKEGIYLREKKTSKQNIIALNKLLIKE
YKWFCGNLEGYEYLIKSREGINKPLSRVRAYEIIRKVGKDFGVENLGTHTMRKTFGYHYYKKTKDIGTLMNMFNHSAPSI
TLKYIGISQDTMNKARREFNI

Specific function: Fime Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fime Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21387; Mature: 21387

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFVEPIRDKQKVRDIQDYLKQTNPRNYIMFITGVYTGLRISDILKLKVKDVKNKEGIYL
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHHHHCCCCCCEEE
REKKTSKQNIIALNKLLIKEYKWFCGNLEGYEYLIKSREGINKPLSRVRAYEIIRKVGKD
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FGVENLGTHTMRKTFGYHYYKKTKDIGTLMNMFNHSAPSITLKYIGISQDTMNKARREFN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCC
I
C
>Mature Secondary Structure
MNFVEPIRDKQKVRDIQDYLKQTNPRNYIMFITGVYTGLRISDILKLKVKDVKNKEGIYL
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHHHHCCCCCCEEE
REKKTSKQNIIALNKLLIKEYKWFCGNLEGYEYLIKSREGINKPLSRVRAYEIIRKVGKD
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FGVENLGTHTMRKTFGYHYYKKTKDIGTLMNMFNHSAPSITLKYIGISQDTMNKARREFN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]