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The map label for this gene is rfaH [H]

Identifier: 153930622

GI number: 153930622

Start: 16987

End: 17466

Strand: Direct

Name: rfaH [H]

Synonym: YpsIP31758_A0058

Alternate gene names: 153930622

Gene position: 16987-17466 (Clockwise)

Preceding gene: 153930585

Following gene: 153930571

Centisome position: 28.95

GC content: 32.08

Gene sequence:

>480_bases
ATGAAAAACTGGTATCTGTTATCATACAAATATGGACAGGTTAACAGAGTTCAATTTGGTTTAGATAGATTAGGCGTTAA
TAGTTTCAGCCCAAGTATACAGGTGAAAAAAGTTAGATCTGACAGCGGAACTATACGCCTTGTAAATGAACCGATGTTTC
CTACATATTTATTTGTAGAGTTTGATATTGAGTCAATACATACAACAACAATAAGTTCAACACTTGGCGTAAATTACTTT
GTCAAGTTCGGAACAGAACCAAAACCAATTCCGTTATCACTAATACACCAACTAATGAATAGGTCTGAATGTAGTAGTCA
AAGAAATGAAGAAATCGATGAAATAGCTACTATCCCAGATAAAAAATTACGCTGTGCTTTATTTATTAAGTTGATAACAC
AGATACCAGATAGTTTTGAACAAAATTCATTAATTAAAACTCATCATTTACCAGCTACACATCAAACATTATCTAGCTAA

Upstream 100 bases:

>100_bases
TTAAACGGTTAAATGTAGTTAAAATTTGCTAACTCACAAAATCCCCAATTCTGGCGTGATTTTGGCGGAGCTTGCCCAAT
AGATAGAAAGGCATTTAAAA

Downstream 100 bases:

>100_bases
TAGCATTAAAAAGGCAGAAAAAATGCAAAGAGAAACCCAATTATTCATCATGGTAGCAATCATTATGTCATCATCAGTAT
ACGCTGATGATGGCAGTGAT

Product: transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKNWYLLSYKYGQVNRVQFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPMFPTYLFVEFDIESIHTTTISSTLGVNYF
VKFGTEPKPIPLSLIHQLMNRSECSSQRNEEIDEIATIPDKKLRCALFIKLITQIPDSFEQNSLIKTHHLPATHQTLSS

Sequences:

>Translated_159_residues
MKNWYLLSYKYGQVNRVQFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPMFPTYLFVEFDIESIHTTTISSTLGVNYF
VKFGTEPKPIPLSLIHQLMNRSECSSQRNEEIDEIATIPDKKLRCALFIKLITQIPDSFEQNSLIKTHHLPATHQTLSS
>Mature_159_residues
MKNWYLLSYKYGQVNRVQFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPMFPTYLFVEFDIESIHTTTISSTLGVNYF
VKFGTEPKPIPLSLIHQLMNRSECSSQRNEEIDEIATIPDKKLRCALFIKLITQIPDSFEQNSLIKTHHLPATHQTLSS

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=150, Percent_Identity=39.3333333333333, Blast_Score=103, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 18206; Mature: 18206

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNWYLLSYKYGQVNRVQFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPMFPTYLFVE
CCCEEEEEEECCCCEEEEECHHHCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE
FDIESIHTTTISSTLGVNYFVKFGTEPKPIPLSLIHQLMNRSECSSQRNEEIDEIATIPD
EECCCEEEEHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCHHHHHHHHCCCHHHHHCCCC
KKLRCALFIKLITQIPDSFEQNSLIKTHHLPATHQTLSS
CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCC
>Mature Secondary Structure
MKNWYLLSYKYGQVNRVQFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPMFPTYLFVE
CCCEEEEEEECCCCEEEEECHHHCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE
FDIESIHTTTISSTLGVNYFVKFGTEPKPIPLSLIHQLMNRSECSSQRNEEIDEIATIPD
EECCCEEEEHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCHHHHHHHHCCCHHHHHCCCC
KKLRCALFIKLITQIPDSFEQNSLIKTHHLPATHQTLSS
CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]