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The map label for this gene is ykuT [H]

Identifier: 152977676

GI number: 152977676

Start: 4075780

End: 4076637

Strand: Reverse

Name: ykuT [H]

Synonym: Bcer98_4017

Alternate gene names: 152977676

Gene position: 4076637-4075780 (Counterclockwise)

Preceding gene: 152977678

Following gene: 152977675

Centisome position: 99.75

GC content: 36.13

Gene sequence:

>858_bases
ATGGATTTATTAACTAAATGGTTTGATTCTATTGATTGGTCCCATATTGGAATGGGAGCAATCAAAATAGTAGTTATTTT
AGTGCTTGGTGCAATTGTAGTTAGAATTGCTAGGGCAATTGTAAGAAATGCATTTCGAATGGGCAGCCGTTCGCCGATTC
AAATTTCAGAGCGCCGTACAATGACGGTAGCAAAACTGCTTGAAAATATTGTGGCATACGTTGTTATATTTATTATGCTA
ATTGCTATTTTAGGGATATTTGGCATTAATGCATCAGGTTTATTAGCGGGGGCAGGGGTAATCGGTTTAGCGGTCGGTTT
TGGTGCCCAAAGTTTAGTAAAAGACGTTATTACAGGATTGTTTATTTTATTAGAAGATCAATTTTCAGTTGGTGATTATG
TTCGCATTGGTCAGTTTGAAGGTGTTGTTTTAGAAATTGGGCTACGTACAACGAAAATAAAAAGTTGGACAGGCGAAATT
CATATTTTACCTAACGGAGGCATTATGCAAGTAACGAACTTCTCTGTTAGCAACAGCGTCGCATTTGTTGATGTTTCTAT
CTCTTATGAGAGTGATATTGACCAAGCAGAACGAGTGATTGAAGAATTATTAGAAGAATTGCCTGCAAAATATGAAGATA
TGGTAACAAAGCCAGAATTATTAGGTGTTCAAACACTTGCTGCATCTGAAGTTGTATTGCGTGTAATTGCTGAAGTAGCG
CCGATGAAACATGCAATTATTGCAAGAGCTCTTCGAAAAGAGATTAAAAATCGTCTTGATTTACACGGTATTGAAATTCC
ATATCCACGTATGGTTTTATATAATCGTGAAGAAATGGTTAATAACACAGCAAATTAA

Upstream 100 bases:

>100_bases
ATAAAAATGTAAATAAGATAGCAAAGTTTTTAAAGAAATAAGGGAAACTTCTGATACAATAAGGGATGAATAAAAGATTA
TTATTGGAGAGGTAAAACAG

Downstream 100 bases:

>100_bases
TGGGAAGAGGGGATTAGAGAATGGAGCAGAAGCAATATAACTTGTACGATATTGTGGAAATGAAGAAAGCCCATCCTTGT
GGTGAAAATCGTTGGAAGAT

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MDLLTKWFDSIDWSHIGMGAIKIVVILVLGAIVVRIARAIVRNAFRMGSRSPIQISERRTMTVAKLLENIVAYVVIFIML
IAILGIFGINASGLLAGAGVIGLAVGFGAQSLVKDVITGLFILLEDQFSVGDYVRIGQFEGVVLEIGLRTTKIKSWTGEI
HILPNGGIMQVTNFSVSNSVAFVDVSISYESDIDQAERVIEELLEELPAKYEDMVTKPELLGVQTLAASEVVLRVIAEVA
PMKHAIIARALRKEIKNRLDLHGIEIPYPRMVLYNREEMVNNTAN

Sequences:

>Translated_285_residues
MDLLTKWFDSIDWSHIGMGAIKIVVILVLGAIVVRIARAIVRNAFRMGSRSPIQISERRTMTVAKLLENIVAYVVIFIML
IAILGIFGINASGLLAGAGVIGLAVGFGAQSLVKDVITGLFILLEDQFSVGDYVRIGQFEGVVLEIGLRTTKIKSWTGEI
HILPNGGIMQVTNFSVSNSVAFVDVSISYESDIDQAERVIEELLEELPAKYEDMVTKPELLGVQTLAASEVVLRVIAEVA
PMKHAIIARALRKEIKNRLDLHGIEIPYPRMVLYNREEMVNNTAN
>Mature_285_residues
MDLLTKWFDSIDWSHIGMGAIKIVVILVLGAIVVRIARAIVRNAFRMGSRSPIQISERRTMTVAKLLENIVAYVVIFIML
IAILGIFGINASGLLAGAGVIGLAVGFGAQSLVKDVITGLFILLEDQFSVGDYVRIGQFEGVVLEIGLRTTKIKSWTGEI
HILPNGGIMQVTNFSVSNSVAFVDVSISYESDIDQAERVIEELLEELPAKYEDMVTKPELLGVQTLAASEVVLRVIAEVA
PMKHAIIARALRKEIKNRLDLHGIEIPYPRMVLYNREEMVNNTAN

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=281, Percent_Identity=30.9608540925267, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1789291, Length=255, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI2367355, Length=211, Percent_Identity=31.2796208530806, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787591, Length=114, Percent_Identity=32.4561403508772, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786670, Length=143, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 31358; Mature: 31358

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLTKWFDSIDWSHIGMGAIKIVVILVLGAIVVRIARAIVRNAFRMGSRSPIQISERRT
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHH
MTVAKLLENIVAYVVIFIMLIAILGIFGINASGLLAGAGVIGLAVGFGAQSLVKDVITGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
FILLEDQFSVGDYVRIGQFEGVVLEIGLRTTKIKSWTGEIHILPNGGIMQVTNFSVSNSV
HHHHCCCCCCCCEEEECCCCCEEEEECCCCEEEECCCCEEEEEECCCEEEEEECCCCCCE
AFVDVSISYESDIDQAERVIEELLEELPAKYEDMVTKPELLGVQTLAASEVVLRVIAEVA
EEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
PMKHAIIARALRKEIKNRLDLHGIEIPYPRMVLYNREEMVNNTAN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHCCCCC
>Mature Secondary Structure
MDLLTKWFDSIDWSHIGMGAIKIVVILVLGAIVVRIARAIVRNAFRMGSRSPIQISERRT
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHH
MTVAKLLENIVAYVVIFIMLIAILGIFGINASGLLAGAGVIGLAVGFGAQSLVKDVITGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
FILLEDQFSVGDYVRIGQFEGVVLEIGLRTTKIKSWTGEIHILPNGGIMQVTNFSVSNSV
HHHHCCCCCCCCEEEECCCCCEEEEECCCCEEEECCCCEEEEEECCCEEEEEECCCCCCE
AFVDVSISYESDIDQAERVIEELLEELPAKYEDMVTKPELLGVQTLAASEVVLRVIAEVA
EEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
PMKHAIIARALRKEIKNRLDLHGIEIPYPRMVLYNREEMVNNTAN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]