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The map label for this gene is pinR [C]

Identifier: 152977651

GI number: 152977651

Start: 4051760

End: 4052347

Strand: Reverse

Name: pinR [C]

Synonym: Bcer98_3992

Alternate gene names: 152977651

Gene position: 4052347-4051760 (Counterclockwise)

Preceding gene: 152977652

Following gene: 152977650

Centisome position: 99.15

GC content: 37.93

Gene sequence:

>588_bases
ATGAAATATGGGTATGCAAGAGTGTCTTCTTTACAGCAGGATTTAACTGCACAAATTAGACAGTTAGAAGAAGCGGGTTG
TGAGGAAATCTTTAGGGAAAAGGTATCGGGTCGTAACAAAGACAAAAGAGATGAGTTTCAAAGGCTGTTGGAAACAGTAG
AGAAGGATGACATTATTGTTGTTACTAAGTTAGACAGATTTGCAAGAAGTACAAAAGATGCACTTGCCACAATTGAAATG
TTGAATGAGAAGGATGTGTCTCTCATTGTCTTAAATATGGGTGGTGACAAGATAGACACATCTACTGCTATTGGTAAGCT
AATGGTGACAGTCCTTGCAGGAATAGCTGAGTTTGAAGCAGATATGATTCGAGAGAGACAACTTGAAGGGATTGCACTTG
CAAAGGAAAGAAACGTGTACAAAGGTAAACCAAAGAAGTACACAGACAAACACAAAGGTTTGCAACATGCTTTAGAACTC
TTCTATAACAGAGATAAGAATGGTATGACTGTGAAGGAAATTGAAGAGATAACAAAGATAAGTAGAGCGACAATTTATAG
AGCAGTAAGAGAAGTGCAAGCACAATGA

Upstream 100 bases:

>100_bases
TCATTTGAGTAGACCCAATTGAAACAAAATCTCTTCTTTGATATACTTGGGATAACAATATCTCATATACATGTCTCAAA
ACAAGAAAGGAAAATGACTT

Downstream 100 bases:

>100_bases
ATAATACAAGGAATAGAAATATGACAATTAAAGAACGGTCTTTGGATTATCATAGTTGAAGATGGCTTGTTTAACAACGA
GATGTATTTATACTTCAAAC

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKYGYARVSSLQQDLTAQIRQLEEAGCEEIFREKVSGRNKDKRDEFQRLLETVEKDDIIVVTKLDRFARSTKDALATIEM
LNEKDVSLIVLNMGGDKIDTSTAIGKLMVTVLAGIAEFEADMIRERQLEGIALAKERNVYKGKPKKYTDKHKGLQHALEL
FYNRDKNGMTVKEIEEITKISRATIYRAVREVQAQ

Sequences:

>Translated_195_residues
MKYGYARVSSLQQDLTAQIRQLEEAGCEEIFREKVSGRNKDKRDEFQRLLETVEKDDIIVVTKLDRFARSTKDALATIEM
LNEKDVSLIVLNMGGDKIDTSTAIGKLMVTVLAGIAEFEADMIRERQLEGIALAKERNVYKGKPKKYTDKHKGLQHALEL
FYNRDKNGMTVKEIEEITKISRATIYRAVREVQAQ
>Mature_195_residues
MKYGYARVSSLQQDLTAQIRQLEEAGCEEIFREKVSGRNKDKRDEFQRLLETVEKDDIIVVTKLDRFARSTKDALATIEM
LNEKDVSLIVLNMGGDKIDTSTAIGKLMVTVLAGIAEFEADMIRERQLEGIALAKERNVYKGKPKKYTDKHKGLQHALEL
FYNRDKNGMTVKEIEEITKISRATIYRAVREVQAQ

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787638, Length=196, Percent_Identity=33.1632653061224, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1787827, Length=196, Percent_Identity=33.1632653061224, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1787404, Length=151, Percent_Identity=36.4238410596026, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 22315; Mature: 22315

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGYARVSSLQQDLTAQIRQLEEAGCEEIFREKVSGRNKDKRDEFQRLLETVEKDDIIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE
VTKLDRFARSTKDALATIEMLNEKDVSLIVLNMGGDKIDTSTAIGKLMVTVLAGIAEFEA
EECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
DMIRERQLEGIALAKERNVYKGKPKKYTDKHKGLQHALELFYNRDKNGMTVKEIEEITKI
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
SRATIYRAVREVQAQ
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYGYARVSSLQQDLTAQIRQLEEAGCEEIFREKVSGRNKDKRDEFQRLLETVEKDDIIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE
VTKLDRFARSTKDALATIEMLNEKDVSLIVLNMGGDKIDTSTAIGKLMVTVLAGIAEFEA
EECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
DMIRERQLEGIALAKERNVYKGKPKKYTDKHKGLQHALELFYNRDKNGMTVKEIEEITKI
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
SRATIYRAVREVQAQ
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8380148 [H]