Click here to switch to the map view.

The map label for this gene is 152977630

Identifier: 152977630

GI number: 152977630

Start: 4032151

End: 4032702

Strand: Reverse

Name: 152977630

Synonym: Bcer98_3970

Alternate gene names: NA

Gene position: 4032702-4032151 (Counterclockwise)

Preceding gene: 152977632

Following gene: 152977629

Centisome position: 98.67

GC content: 31.52

Gene sequence:

>552_bases
ATGAATGATAAGGAATTAGTGGGCGAATTGAAAAATCAAAATATAGAAGCATTAGATCAAGTTATTCTTCAGTATAGCAG
GCTTATATATGGCGTTATAGGAAGTATATTAGGAGAAAATCACGAAAGAGTTGAAATTGAGGAATGCTATAACGATGTTC
TTTTCATTCTGTGGTATAAAATAGATCATTTTCAAATTGAAAAGGGACAATTTAAGAACTGGATTATTTCGATTGCGAAG
TTTAAGGCGTTAGATTATAAAAGAAAGTTTAAGCGAAAATTGATAGAACAAACAATGGAACGTTGCATTTTACAAGATAA
AGAAGATGTAGAACAAGTTTTGTTGAAAGAGGAAGAAAAAGAATTTGTTTTAGAGGTCATTCAACGACTTGATCAGGTGG
ACTATCACATTTTTTATCGAAGATATATTGCAGATGAGAGTATAAAGCAGATTTCTGAAGAACTACATATGAGTACGAGT
GCCATTTATACAAGATTGTCTAGAGGAAGGGAAAAATTAAAAAAGGGAATGGAGGGATATTATGAGGTATGA

Upstream 100 bases:

>100_bases
GTGTTTAATAGTAGATGTTATTTGTTAAAAATTTTTAATTAAAAATATTGTAAGAAACTATTTGTTACACTCGTATATAT
AAGTAAAGGAGGGAGAAGGT

Downstream 100 bases:

>100_bases
AAATGGCCTAGATCAAGTTGTTTTGGAGCAGTGGGATGAACGACAAATAGCTCATTTTGAAGAAATAGGAGAGCGTTTGA
TTGGGAATTTGGAAGAGAAG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase; RNA Polymerase Sigma-70 Factor Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70factor

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNDKELVGELKNQNIEALDQVILQYSRLIYGVIGSILGENHERVEIEECYNDVLFILWYKIDHFQIEKGQFKNWIISIAK
FKALDYKRKFKRKLIEQTMERCILQDKEDVEQVLLKEEEKEFVLEVIQRLDQVDYHIFYRRYIADESIKQISEELHMSTS
AIYTRLSRGREKLKKGMEGYYEV

Sequences:

>Translated_183_residues
MNDKELVGELKNQNIEALDQVILQYSRLIYGVIGSILGENHERVEIEECYNDVLFILWYKIDHFQIEKGQFKNWIISIAK
FKALDYKRKFKRKLIEQTMERCILQDKEDVEQVLLKEEEKEFVLEVIQRLDQVDYHIFYRRYIADESIKQISEELHMSTS
AIYTRLSRGREKLKKGMEGYYEV
>Mature_183_residues
MNDKELVGELKNQNIEALDQVILQYSRLIYGVIGSILGENHERVEIEECYNDVLFILWYKIDHFQIEKGQFKNWIISIAK
FKALDYKRKFKRKLIEQTMERCILQDKEDVEQVLLKEEEKEFVLEVIQRLDQVDYHIFYRRYIADESIKQISEELHMSTS
AIYTRLSRGREKLKKGMEGYYEV

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22067; Mature: 22067

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKELVGELKNQNIEALDQVILQYSRLIYGVIGSILGENHERVEIEECYNDVLFILWYK
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH
IDHFQIEKGQFKNWIISIAKFKALDYKRKFKRKLIEQTMERCILQDKEDVEQVLLKEEEK
HHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
EFVLEVIQRLDQVDYHIFYRRYIADESIKQISEELHMSTSAIYTRLSRGREKLKKGMEGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEV
CCC
>Mature Secondary Structure
MNDKELVGELKNQNIEALDQVILQYSRLIYGVIGSILGENHERVEIEECYNDVLFILWYK
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH
IDHFQIEKGQFKNWIISIAKFKALDYKRKFKRKLIEQTMERCILQDKEDVEQVLLKEEEK
HHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
EFVLEVIQRLDQVDYHIFYRRYIADESIKQISEELHMSTSAIYTRLSRGREKLKKGMEGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA