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The map label for this gene is ywhC [H]

Identifier: 152977560

GI number: 152977560

Start: 3953835

End: 3954509

Strand: Reverse

Name: ywhC [H]

Synonym: Bcer98_3898

Alternate gene names: 152977560

Gene position: 3954509-3953835 (Counterclockwise)

Preceding gene: 152977562

Following gene: 152977559

Centisome position: 96.76

GC content: 37.19

Gene sequence:

>675_bases
ATGGATCAGTTATTTAGGTATCCATTGCACCAAATTCCACTTGTAGCAATGGCTATTATTATCGCTTTATCTGTGCATGA
ATTTGCACATGCATATGTTGCATATAAGTTCGGGGATGACACAGCAAAAAGACAGGGGCGTTTAACGTTGTCTCCAATGT
CTCATCTAGACCCAATTGGTATGATTGCTGTACTTATTTTAGGCTTTGGTTGGGCACGTCCTGTACCTGTTAACCCATAT
AATTTTAAAAGGCCACGTCTTGCTGGCATTTTAGTATCTATTGCAGGGCCGATTAGTAACTTTCTTTTGGCAGCAATCGG
CTTAATCATTTGGTATGCTCTAATAAGGATTGGTGTTTTAACTGCAATTCCATTTGCAGTTGCAGATACATTAGGACAAT
TTTTTGAAATTTTTATTGTTCTTAATGTTGTTTTGCTTGTTTTTAATTTATTACCGATTCCGCCACTTGATGGATATCGT
GTTATGGAAGATTTAGCGCCAGCAAATATTCGCGCCAAAATGACGCAGTATGAAAAATATGGAGCAATTGCGTTATTAAT
TCTTGTGATTACACCGCTTGATCGCTATACAATTCAACCTATTTTCAGCGTGGTCATTCCGCAAGTATTAAGGTTTTTAG
AAAATATCATTGCGCCTATCTTTGGGCTTATATAA

Upstream 100 bases:

>100_bases
CTTTATGTAAGTTACAATCTTATTATAACGGATTTTAAGGGAGAACAATCGCAAAAAAACAAATATTTTCTTTTTTGACA
TAATGAAGAGGAGATGAAGT

Downstream 100 bases:

>100_bases
TCTGTGAGTGAGGAGGAATTGTCTATGACAGAGAAAAAGAAAAAAATCGGTTTTAATATTATAAAGAACGATTCAACAGA
TGGACATGGTGGTTTTGGTG

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMSHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNFLLAAIGLIIWYALIRIGVLTAIPFAVADTLGQFFEIFIVLNVVLLVFNLLPIPPLDGYR
VMEDLAPANIRAKMTQYEKYGAIALLILVITPLDRYTIQPIFSVVIPQVLRFLENIIAPIFGLI

Sequences:

>Translated_224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMSHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNFLLAAIGLIIWYALIRIGVLTAIPFAVADTLGQFFEIFIVLNVVLLVFNLLPIPPLDGYR
VMEDLAPANIRAKMTQYEKYGAIALLILVITPLDRYTIQPIFSVVIPQVLRFLENIIAPIFGLI
>Mature_224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMSHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNFLLAAIGLIIWYALIRIGVLTAIPFAVADTLGQFFEIFIVLNVVLLVFNLLPIPPLDGYR
VMEDLAPANIRAKMTQYEKYGAIALLILVITPLDRYTIQPIFSVVIPQVLRFLENIIAPIFGLI

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24918; Mature: 24918

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMSHLDPIG
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHCCCEEECCHHHCCHHH
MIAVLILGFGWARPVPVNPYNFKRPRLAGILVSIAGPISNFLLAAIGLIIWYALIRIGVL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIPFAVADTLGQFFEIFIVLNVVLLVFNLLPIPPLDGYRVMEDLAPANIRAKMTQYEKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
GAIALLILVITPLDRYTIQPIFSVVIPQVLRFLENIIAPIFGLI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMSHLDPIG
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHCCCEEECCHHHCCHHH
MIAVLILGFGWARPVPVNPYNFKRPRLAGILVSIAGPISNFLLAAIGLIIWYALIRIGVL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIPFAVADTLGQFFEIFIVLNVVLLVFNLLPIPPLDGYRVMEDLAPANIRAKMTQYEKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
GAIALLILVITPLDRYTIQPIFSVVIPQVLRFLENIIAPIFGLI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]