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The map label for this gene is spoIIID [H]

Identifier: 152977467

GI number: 152977467

Start: 3861013

End: 3861411

Strand: Reverse

Name: spoIIID [H]

Synonym: Bcer98_3799

Alternate gene names: 152977467

Gene position: 3861411-3861013 (Counterclockwise)

Preceding gene: 152977468

Following gene: 152977466

Centisome position: 94.48

GC content: 38.35

Gene sequence:

>399_bases
GTGAGGCATTTCAGTATAAATCCTAGAATATTTAACGCTTACAAACAGCACTCGAATTTACTTCTTAGTCGTATGCAGCG
AGTCTCATTTCACGCTTCTCACATCCAATTTAGGGAGGCGAGTGGTGTGCACGATTACATCAAAGAGAGAACTATCAAGA
TTGGTAAGTATATCGTGGAGACAAGAAAGACAGTGCGTGTAATCGCAAAGGAATTTGGGGTATCAAAAAGTACAGTCCAT
AAAGATTTAACAGAGCGTCTGCCAGAAATTAATCCAGAGCTTGCAAATGAAGTAAAGGAAATTCTTGATTATCATAAGTC
AATTCGTCATTTGCGTGGAGGGGAAGCAACAAAACAGAAATATAGAAAAGAAGATACAGAAAGAACCGTGCAACAATAA

Upstream 100 bases:

>100_bases
CACTTAGTCCGCAAAAATAGCGAACATGTAGCATATATCAGTAAGGCGGGCAATACAATGATATAAACCAAAGCAAAGAG
AGTGTTTGAGGTGAGAAATC

Downstream 100 bases:

>100_bases
AAGACTAGAAAGCAAACATTCCTTATGCATTTCTTCGTAATTTTAAGAAGAATTCTTTTTGCGAATATTACGTTTCTGTT
AAATTTATGATAAAATCAGA

Product: sporulation stage III transcriptional regulator SpoIIID

Products: NA

Alternate protein names: 14 kDa transcription factor [H]

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MRHFSINPRIFNAYKQHSNLLLSRMQRVSFHASHIQFREASGVHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVH
KDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDTERTVQQ

Sequences:

>Translated_132_residues
MRHFSINPRIFNAYKQHSNLLLSRMQRVSFHASHIQFREASGVHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVH
KDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDTERTVQQ
>Mature_132_residues
MRHFSINPRIFNAYKQHSNLLLSRMQRVSFHASHIQFREASGVHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVH
KDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDTERTVQQ

Specific function: This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR014208
- InterPro:   IPR018356 [H]

Pfam domain/function: PF12116 SpoIIID [H]

EC number: NA

Molecular weight: Translated: 15613; Mature: 15613

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS00894 HTH_DEOR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHFSINPRIFNAYKQHSNLLLSRMQRVSFHASHIQFREASGVHDYIKERTIKIGKYIVE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TRKTVRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQK
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YRKEDTERTVQQ
HHHHHHHHHHCC
>Mature Secondary Structure
MRHFSINPRIFNAYKQHSNLLLSRMQRVSFHASHIQFREASGVHDYIKERTIKIGKYIVE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TRKTVRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQK
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YRKEDTERTVQQ
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2514119; 2112673; 9353933; 9384377; 2492118 [H]