Click here to switch to the map view.

The map label for this gene is sodC2 [H]

Identifier: 152977201

GI number: 152977201

Start: 3587673

End: 3588215

Strand: Reverse

Name: sodC2 [H]

Synonym: Bcer98_3518

Alternate gene names: 152977201

Gene position: 3588215-3587673 (Counterclockwise)

Preceding gene: 152977202

Following gene: 152977199

Centisome position: 87.8

GC content: 39.41

Gene sequence:

>543_bases
ATGAAAAAACAGCTTTTATTTAGTTGTTGTATGCTAGTTCTTATCACAGGCTGTGACAAAGGGAACTCAAAAGAAATTGA
TGTGAAGTTATACAATGCGTCTGGCGATGAGGTTGGAACAGCGAAAGTAACGCAGCAAACAAGCGGAGTGAAAATATCAA
TTAAAGCAGATGGATTTACACCTGGTGCACATGGATTACATATTCATGAAATGGGAGAATGTAAAGCACCACGCTTTGAG
TCAGCTGGTAATCATTTTAATGTAGATGATAAGAAGAAGCATGGGCTTATGAATCCAAAAGGAGCAGAGAACGGTGATTT
ACCAAATGTGATTGCGGACGATACAGGAAAGATTAAAGCGGAAATTGAAGCATCAAATGTATCGCTTGAAGAAGGGCGAA
CCACTTTATATCGCAAAGATGGAGCCTCTATTATCATTACTGAAAATCCGGATGATGGCATGACGCAGCCGACAGGAAAT
TCAGGGAATCGAATTGCCTGTGGGGTTATTGTGAAAAAAGTATCTGCGAATAAACAAAAGTAA

Upstream 100 bases:

>100_bases
AGAAAAGTTGTTAGCTGAAAAGAAACGCTAATTCGTTTTTGTATGTTTCTCTTCAAGCTCGGATACTCTAAGGACAGAAT
GTATCTTGGAGGGAATGGGA

Downstream 100 bases:

>100_bases
GAGCTACTTTGAAAGGTAGCTCTTACTTTTGTTTATTCTAATTGATAGGAAGTTAAGGTTCGTGAAGGGACATTGATAAT
GAAGAAAGGGCTACATCGAG

Product: superoxide dismutase copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKKQLLFSCCMLVLITGCDKGNSKEIDVKLYNASGDEVGTAKVTQQTSGVKISIKADGFTPGAHGLHIHEMGECKAPRFE
SAGNHFNVDDKKKHGLMNPKGAENGDLPNVIADDTGKIKAEIEASNVSLEEGRTTLYRKDGASIIITENPDDGMTQPTGN
SGNRIACGVIVKKVSANKQK

Sequences:

>Translated_180_residues
MKKQLLFSCCMLVLITGCDKGNSKEIDVKLYNASGDEVGTAKVTQQTSGVKISIKADGFTPGAHGLHIHEMGECKAPRFE
SAGNHFNVDDKKKHGLMNPKGAENGDLPNVIADDTGKIKAEIEASNVSLEEGRTTLYRKDGASIIITENPDDGMTQPTGN
SGNRIACGVIVKKVSANKQK
>Mature_180_residues
MKKQLLFSCCMLVLITGCDKGNSKEIDVKLYNASGDEVGTAKVTQQTSGVKISIKADGFTPGAHGLHIHEMGECKAPRFE
SAGNHFNVDDKKKHGLMNPKGAENGDLPNVIADDTGKIKAEIEASNVSLEEGRTTLYRKDGASIIITENPDDGMTQPTGN
SGNRIACGVIVKKVSANKQK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=122, Percent_Identity=36.8852459016393, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI4507149, Length=129, Percent_Identity=39.5348837209302, Blast_Score=64, Evalue=6e-11,
Organism=Escherichia coli, GI1787934, Length=180, Percent_Identity=31.6666666666667, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 19201; Mature: 19201

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQLLFSCCMLVLITGCDKGNSKEIDVKLYNASGDEVGTAKVTQQTSGVKISIKADGFT
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCC
PGAHGLHIHEMGECKAPRFESAGNHFNVDDKKKHGLMNPKGAENGDLPNVIADDTGKIKA
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCEEEE
EIEASNVSLEEGRTTLYRKDGASIIITENPDDGMTQPTGNSGNRIACGVIVKKVSANKQK
EEEECCEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEHEEEEECCCCCCC
>Mature Secondary Structure
MKKQLLFSCCMLVLITGCDKGNSKEIDVKLYNASGDEVGTAKVTQQTSGVKISIKADGFT
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCC
PGAHGLHIHEMGECKAPRFESAGNHFNVDDKKKHGLMNPKGAENGDLPNVIADDTGKIKA
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCEEEE
EIEASNVSLEEGRTTLYRKDGASIIITENPDDGMTQPTGNSGNRIACGVIVKKVSANKQK
EEEECCEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEHEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]