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The map label for this gene is liaH [H]

Identifier: 152977159

GI number: 152977159

Start: 3532686

End: 3533438

Strand: Reverse

Name: liaH [H]

Synonym: Bcer98_3471

Alternate gene names: 152977159

Gene position: 3533438-3532686 (Counterclockwise)

Preceding gene: 152977161

Following gene: 152977158

Centisome position: 86.46

GC content: 36.92

Gene sequence:

>753_bases
ATGAATATTTTTACTGTGAAGGGAGATTTTTTAAGGCTTCTAAGTAGGGGATTTGAAATTAGATGTAAATATATAGGAGG
AATTGAAATGTCTTTATTTAAGCGATTAAGGGATCTAACGATGTCAAATGTGTACGCACTCATTGAAAAAGCGGAAGATC
CAGTTAAGATGACGGATCAATATTTACGTGATATGCAAGAGGATGTACAAGAAGCTGAGAAGAGTGTAGCAGCTCAAATT
GCGCTTGAGAAAAAGTTTAAATTATTATTTGAAGAGCAAGAAGCACTTGTTAAAAAACGTGAAGAACAAGCGCATATGGC
TGTTCAAGCAAACAATATTGATCTTGCGCGTCGCGCTTTAGAAGAGAAGCAAAGTGCAGAGCAAAAAATGAATGAATATA
AAGCAAGTTATGAACAAAATAAAGCGGCTGCGGATAACCTTCGTGCTAAATTAGAAGAAATGCGCAAGCAATTAACAGAA
TTGAAAAATAAACGTGAAACGCTTGTTGCGCGTGTAAATGCAGCCAAAGCACAAAAAAGTATCAATCAAGCAATGTCTGG
ATTCGATGCTAATACTGCAAAAGCGGGGCTTAGCCGCATGGAAGAAAAAGCTCTTCAATTAGAAGCAGAAGCAGAGGCAA
GCGGTGAAATTTATAAAAAAGAAAAGTCGTTAGATGAGGAATTTGCAGCTTTAAATAAAAACTCAGCTGTAGAGGACGAA
TTAGCGCGTATTATGAAGCAGTACGAGAAGTAA

Upstream 100 bases:

>100_bases
ACACATATTGTAATCAGAATGTAAGATTATTCTTTTTATATTTGAAAAATAAGATGTAAGGGCATGTTGGGTTTGATATA
ATGTACACAAGGTTATAAAA

Downstream 100 bases:

>100_bases
TATAGAAGAAAAATCTTTCTTTTTTAGGAGAAAGAGTGTTTAGCTGTATATAGACGCAGCATTTTATGCTGTAAAAAAGT
AATTTACTTTATTTGTATTT

Product: phage shock protein A, PspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNIFTVKGDFLRLLSRGFEIRCKYIGGIEMSLFKRLRDLTMSNVYALIEKAEDPVKMTDQYLRDMQEDVQEAEKSVAAQI
ALEKKFKLLFEEQEALVKKREEQAHMAVQANNIDLARRALEEKQSAEQKMNEYKASYEQNKAAADNLRAKLEEMRKQLTE
LKNKRETLVARVNAAKAQKSINQAMSGFDANTAKAGLSRMEEKALQLEAEAEASGEIYKKEKSLDEEFAALNKNSAVEDE
LARIMKQYEK

Sequences:

>Translated_250_residues
MNIFTVKGDFLRLLSRGFEIRCKYIGGIEMSLFKRLRDLTMSNVYALIEKAEDPVKMTDQYLRDMQEDVQEAEKSVAAQI
ALEKKFKLLFEEQEALVKKREEQAHMAVQANNIDLARRALEEKQSAEQKMNEYKASYEQNKAAADNLRAKLEEMRKQLTE
LKNKRETLVARVNAAKAQKSINQAMSGFDANTAKAGLSRMEEKALQLEAEAEASGEIYKKEKSLDEEFAALNKNSAVEDE
LARIMKQYEK
>Mature_250_residues
MNIFTVKGDFLRLLSRGFEIRCKYIGGIEMSLFKRLRDLTMSNVYALIEKAEDPVKMTDQYLRDMQEDVQEAEKSVAAQI
ALEKKFKLLFEEQEALVKKREEQAHMAVQANNIDLARRALEEKQSAEQKMNEYKASYEQNKAAADNLRAKLEEMRKQLTE
LKNKRETLVARVNAAKAQKSINQAMSGFDANTAKAGLSRMEEKALQLEAEAEASGEIYKKEKSLDEEFAALNKNSAVEDE
LARIMKQYEK

Specific function: The Phage Shock Protein (Psp) Operon (Pspabce) May Play A Significant Role In The Competition For Survival Under Nutrient- Or Energy-Limited Conditions. Pspa Has A Role As A Negative Regulator, Is Required For Efficient Translocation And Has An Unknown Fu

COG id: COG1842

COG function: function code KT; Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspA/IM30 family [H]

Homologues:

Organism=Escherichia coli, GI2367118, Length=225, Percent_Identity=30.2222222222222, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007157 [H]

Pfam domain/function: PF04012 PspA_IM30 [H]

EC number: NA

Molecular weight: Translated: 28659; Mature: 28659

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFTVKGDFLRLLSRGFEIRCKYIGGIEMSLFKRLRDLTMSNVYALIEKAEDPVKMTDQ
CCEEECCHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YLRDMQEDVQEAEKSVAAQIALEKKFKLLFEEQEALVKKREEQAHMAVQANNIDLARRAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
EEKQSAEQKMNEYKASYEQNKAAADNLRAKLEEMRKQLTELKNKRETLVARVNAAKAQKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INQAMSGFDANTAKAGLSRMEEKALQLEAEAEASGEIYKKEKSLDEEFAALNKNSAVEDE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LARIMKQYEK
HHHHHHHHCC
>Mature Secondary Structure
MNIFTVKGDFLRLLSRGFEIRCKYIGGIEMSLFKRLRDLTMSNVYALIEKAEDPVKMTDQ
CCEEECCHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YLRDMQEDVQEAEKSVAAQIALEKKFKLLFEEQEALVKKREEQAHMAVQANNIDLARRAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
EEKQSAEQKMNEYKASYEQNKAAADNLRAKLEEMRKQLTELKNKRETLVARVNAAKAQKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INQAMSGFDANTAKAGLSRMEEKALQLEAEAEASGEIYKKEKSLDEEFAALNKNSAVEDE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LARIMKQYEK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695 [H]