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The map label for this gene is ydcM [C]

Identifier: 152977050

GI number: 152977050

Start: 3425529

End: 3426680

Strand: Reverse

Name: ydcM [C]

Synonym: Bcer98_3357

Alternate gene names: 152977050

Gene position: 3426680-3425529 (Counterclockwise)

Preceding gene: 152977051

Following gene: 152977049

Centisome position: 83.84

GC content: 36.37

Gene sequence:

>1152_bases
ATGTTAGTTAACAAAGTGTATAAGTTTCGTATCTATCCAAACAAGGAGCAAGAAATTCTAATTGCAAAAACAATCGGTTG
TTCACGTTTTGTATTCAATCATTTTTTAGCACAATGGAATGACGCATACAAAGAGACAGGCAAAGGATTAACTTATAACA
CTTGCTCTTCTCAATTAACACAACTAAAGAAAGAATTAGTTTGGTTAAAAGAAGTAGACAGCACATCACTTCAATCATCA
CTCAAAAACCTTGCTGATTCGTATACTCGATTCTTCAAGAAACAAAACAAAGCACCGCGTTTCAAGTCTAAAAAGAATAA
AGTGCAATCCTACACGACAAAGCATACGAATGGAAATATTGCGATTGCGGGCAACAAAATCAAGTTACCTAAACTTGGAT
TAGTTAAGTTTGCGAAAAGTCGTGAAGTAGAAGGGCGTATTCTTCATGCTACAATGAGACGAAATCCAAGTGGCAAGTAT
TTTGTTTCGATTCTTGCTGAAACAGAAGTACAAGAACTTCCTAAAACATGTTCATCTGTTGGCATGGATGTTGGTCTTAA
AGATTTTGCGATTCTTTCAACAGGTGAAGTTTTTGGTAATCCTAAATGGTTTCGTAAACTAGAAGAAAAATTAGCGAAAG
CACAACGTGTTCTTTCTAGGCGACAGGAATTAGCGTTAAAACGAAAATGCAAACTGGATGAAGCAAAAAACTATCAAAAG
CAAAAACGTAAAGTAGCTTGCATCCATGAGAACATCACGAATGCAAGAACAGACTATTTGCAAAAAATCTCTACTTACAT
TGTCAAAAACCACGACATCATTGGTATGGAAGATTTGCAAGTGTCAAATATGTTGAAGAACCGTAAGTTAGCGAAAGCAA
TTCGTGAAGTATCATGGTCGCAATTTAGAACGATGTTAGAATACAAAGCAAAGTGGTATGGCAAACAGGTAGTAACTGTG
TCTAAAACCTTTGCAAGCTCTCAATTATGTTCAGTTTGCGGTTACCAAAACAAAGACGTTAAGAATCTCAACCTACGTGA
ATGGGATTGTCCTTCTTGTGGCACACATCACGATCGAGATATGAATGCAAGTATCAATCTAAAAAATGAAGCAATAAGAC
TTCTAACCGTAGGGACTACGGGGATAGCCTAA

Upstream 100 bases:

>100_bases
CGTAATTAATTTTGAAATACGTTCCATACTACTTCACCTCCTTTTAGTATATACTTATGTTTTGTATATAATTAGTATAT
ACTAAAAGGAGGTGAAATCA

Downstream 100 bases:

>100_bases
TCAATAACTAACCGTTAGGTTGGTGTTCTTAGGAATCTCCCACTTCAAACAGCTCGTAAGAGTGTTAAGTGGGGGTAGTT
CAAAAGAAATAAAATGAATA

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MLVNKVYKFRIYPNKEQEILIAKTIGCSRFVFNHFLAQWNDAYKETGKGLTYNTCSSQLTQLKKELVWLKEVDSTSLQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNIAIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKY
FVSILAETEVQELPKTCSSVGMDVGLKDFAILSTGEVFGNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVACIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNRKLAKAIREVSWSQFRTMLEYKAKWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLNLREWDCPSCGTHHDRDMNASINLKNEAIRLLTVGTTGIA

Sequences:

>Translated_383_residues
MLVNKVYKFRIYPNKEQEILIAKTIGCSRFVFNHFLAQWNDAYKETGKGLTYNTCSSQLTQLKKELVWLKEVDSTSLQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNIAIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKY
FVSILAETEVQELPKTCSSVGMDVGLKDFAILSTGEVFGNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVACIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNRKLAKAIREVSWSQFRTMLEYKAKWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLNLREWDCPSCGTHHDRDMNASINLKNEAIRLLTVGTTGIA
>Mature_383_residues
MLVNKVYKFRIYPNKEQEILIAKTIGCSRFVFNHFLAQWNDAYKETGKGLTYNTCSSQLTQLKKELVWLKEVDSTSLQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNIAIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKY
FVSILAETEVQELPKTCSSVGMDVGLKDFAILSTGEVFGNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVACIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNRKLAKAIREVSWSQFRTMLEYKAKWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLNLREWDCPSCGTHHDRDMNASINLKNEAIRLLTVGTTGIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=372, Percent_Identity=34.9462365591398, Blast_Score=196, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43958; Mature: 43958

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVNKVYKFRIYPNKEQEILIAKTIGCSRFVFNHFLAQWNDAYKETGKGLTYNTCSSQLT
CCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHH
QLKKELVWLKEVDSTSLQSSLKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCCCCE
AIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKYFVSILAETEVQELPKTCSSV
EEECCEEECCCHHHHHHHHCCCCCCEEEEHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHC
GMDVGLKDFAILSTGEVFGNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
CCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QKRKVACIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNRKLAKAIREVSWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
QFRTMLEYKAKWYGKQVVTVSKTFASSQLCSVCGYQNKDVKNLNLREWDCPSCGTHHDRD
HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
MNASINLKNEAIRLLTVGTTGIA
CCCEEEECCCEEEEEEECCCCCC
>Mature Secondary Structure
MLVNKVYKFRIYPNKEQEILIAKTIGCSRFVFNHFLAQWNDAYKETGKGLTYNTCSSQLT
CCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHH
QLKKELVWLKEVDSTSLQSSLKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCCCCE
AIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKYFVSILAETEVQELPKTCSSV
EEECCEEECCCHHHHHHHHCCCCCCEEEEHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHC
GMDVGLKDFAILSTGEVFGNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
CCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QKRKVACIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNRKLAKAIREVSWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
QFRTMLEYKAKWYGKQVVTVSKTFASSQLCSVCGYQNKDVKNLNLREWDCPSCGTHHDRD
HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
MNASINLKNEAIRLLTVGTTGIA
CCCEEEECCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]