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The map label for this gene is rbsR [H]

Identifier: 152976514

GI number: 152976514

Start: 2880777

End: 2881703

Strand: Reverse

Name: rbsR [H]

Synonym: Bcer98_2803

Alternate gene names: 152976514

Gene position: 2881703-2880777 (Counterclockwise)

Preceding gene: 152976515

Following gene: 152976511

Centisome position: 70.51

GC content: 35.06

Gene sequence:

>927_bases
GTGGCAACAATACGTGATGTTGCAAAAGTAGCTGGTGTTTCAGTCGCAACCGTTTCACGAGTCATGAATGAAAAAGGATA
TGTTCATGAAGATACAGTGAAACAAGTGAAACAAGCAATTGAAGAATTAAACTATAGGCCTAATGCAGTAGCGAAAGCTT
TATTTACAAAATCTTCAACAATTATTGCTATACTTGTGCCGAATTTACGAAATCCATCATACATAACTTTACTTCGTTTT
ATAGAAGAATCAGCATATCAAGAGGGGTATCAAGTTATTGTTTGCAGTGTGGAAAATAAAAGAAATTATATAGATATATT
ATCTCGAAATCATATAGCTGGAATTCTTATGACGGAGGAAGTCTTTCAGGAAGTAGGAGAAGTTTCAGTTCCATTTTCTG
TAATAGATATGAAAATGCCGCTTTCCAAATATTATCAAAGTGCCAAAAAGGCCGTTACTATGCTTAAAGAAAAAGGATGC
CATTTTCTAGCGTATATTGGAGAAAAGGATCATCGTGAAGAGATGGAGGAGCATATATCTGGCTTTTTAGATGCAGTTTG
GGAAGAGAAAATACCATATCGAGTGGAATCTTTAGAAGAGGATACGGAAAAGCGATATCGAGAAGTATTACAAAAGTATC
CATACGTAGACGGTATTGTCGCTTCAAGTGATAAGGATGCCATTTCTATTATTCGTGCAGCAAATTCTCTTGGCATTCAT
ATACCGAATGAATTACAAGTTATTGGATTTCAAGGGAGTATGCAAGGAGAATGGGTAACCCCATCATTATCAACGATAGA
AAACTGTTATGAAAAAAAAGTAGTGCATACCTTGCAACAATTAGTTGGAAAAATAAAGAAGAAACAAGTGAAACATGAAG
TTGTGGAAACGGAGTTTGTATTTATAGAAAGAGAATCAACGAAGTGA

Upstream 100 bases:

>100_bases
ATGTAACAATTTTCAGAAATATAAAACAACAAACTTGACGGTATGTATTTTTTAGATTACTTTTTAGTTGTAAACTATTA
CCATATTAAGGGGTGACGAT

Downstream 100 bases:

>100_bases
AAAAGGTGCGCTTGAACAGCGCACCTTTTTATAGTGTAATTGCGGCAATAAATCCGAATAGAAGTAATGGAATATTGTAG
TGCAGAAAAGTTGGCACACA

Product: regulatory protein LacI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MATIRDVAKVAGVSVATVSRVMNEKGYVHEDTVKQVKQAIEELNYRPNAVAKALFTKSSTIIAILVPNLRNPSYITLLRF
IEESAYQEGYQVIVCSVENKRNYIDILSRNHIAGILMTEEVFQEVGEVSVPFSVIDMKMPLSKYYQSAKKAVTMLKEKGC
HFLAYIGEKDHREEMEEHISGFLDAVWEEKIPYRVESLEEDTEKRYREVLQKYPYVDGIVASSDKDAISIIRAANSLGIH
IPNELQVIGFQGSMQGEWVTPSLSTIENCYEKKVVHTLQQLVGKIKKKQVKHEVVETEFVFIERESTK

Sequences:

>Translated_308_residues
MATIRDVAKVAGVSVATVSRVMNEKGYVHEDTVKQVKQAIEELNYRPNAVAKALFTKSSTIIAILVPNLRNPSYITLLRF
IEESAYQEGYQVIVCSVENKRNYIDILSRNHIAGILMTEEVFQEVGEVSVPFSVIDMKMPLSKYYQSAKKAVTMLKEKGC
HFLAYIGEKDHREEMEEHISGFLDAVWEEKIPYRVESLEEDTEKRYREVLQKYPYVDGIVASSDKDAISIIRAANSLGIH
IPNELQVIGFQGSMQGEWVTPSLSTIENCYEKKVVHTLQQLVGKIKKKQVKHEVVETEFVFIERESTK
>Mature_307_residues
ATIRDVAKVAGVSVATVSRVMNEKGYVHEDTVKQVKQAIEELNYRPNAVAKALFTKSSTIIAILVPNLRNPSYITLLRFI
EESAYQEGYQVIVCSVENKRNYIDILSRNHIAGILMTEEVFQEVGEVSVPFSVIDMKMPLSKYYQSAKKAVTMLKEKGCH
FLAYIGEKDHREEMEEHISGFLDAVWEEKIPYRVESLEEDTEKRYREVLQKYPYVDGIVASSDKDAISIIRAANSLGIHI
PNELQVIGFQGSMQGEWVTPSLSTIENCYEKKVVHTLQQLVGKIKKKQVKHEVVETEFVFIERESTK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=337, Percent_Identity=26.7062314540059, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790715, Length=321, Percent_Identity=23.6760124610592, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789202, Length=289, Percent_Identity=27.3356401384083, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790194, Length=332, Percent_Identity=25.3012048192771, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788474, Length=289, Percent_Identity=28.3737024221453, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI48994940, Length=322, Percent_Identity=23.6024844720497, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789068, Length=311, Percent_Identity=27.3311897106109, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787580, Length=295, Percent_Identity=27.1186440677966, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790369, Length=287, Percent_Identity=24.7386759581882, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786268, Length=98, Percent_Identity=36.734693877551, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786540, Length=291, Percent_Identity=23.3676975945017, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789456, Length=292, Percent_Identity=25, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35098; Mature: 34967

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIRDVAKVAGVSVATVSRVMNEKGYVHEDTVKQVKQAIEELNYRPNAVAKALFTKSST
CCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
IIAILVPNLRNPSYITLLRFIEESAYQEGYQVIVCSVENKRNYIDILSRNHIAGILMTEE
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCHHHHHHHHH
VFQEVGEVSVPFSVIDMKMPLSKYYQSAKKAVTMLKEKGCHFLAYIGEKDHREEMEEHIS
HHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
GFLDAVWEEKIPYRVESLEEDTEKRYREVLQKYPYVDGIVASSDKDAISIIRAANSLGIH
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCEE
IPNELQVIGFQGSMQGEWVTPSLSTIENCYEKKVVHTLQQLVGKIKKKQVKHEVVETEFV
CCCCEEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
FIERESTK
EEEECCCC
>Mature Secondary Structure 
ATIRDVAKVAGVSVATVSRVMNEKGYVHEDTVKQVKQAIEELNYRPNAVAKALFTKSST
CCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
IIAILVPNLRNPSYITLLRFIEESAYQEGYQVIVCSVENKRNYIDILSRNHIAGILMTEE
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCHHHHHHHHH
VFQEVGEVSVPFSVIDMKMPLSKYYQSAKKAVTMLKEKGCHFLAYIGEKDHREEMEEHIS
HHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
GFLDAVWEEKIPYRVESLEEDTEKRYREVLQKYPYVDGIVASSDKDAISIIRAANSLGIH
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCEE
IPNELQVIGFQGSMQGEWVTPSLSTIENCYEKKVVHTLQQLVGKIKKKQVKHEVVETEFV
CCCCEEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
FIERESTK
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]