Click here to switch to the map view.

The map label for this gene is rnc [H]

Identifier: 152976215

GI number: 152976215

Start: 2600055

End: 2600792

Strand: Reverse

Name: rnc [H]

Synonym: Bcer98_2501

Alternate gene names: 152976215

Gene position: 2600792-2600055 (Counterclockwise)

Preceding gene: 152976216

Following gene: 152976214

Centisome position: 63.64

GC content: 37.26

Gene sequence:

>738_bases
ATGCCGTACCGTAAATATAGAGAAAAAAAATATGAAGCAAAATATCGTGAAGCTTTTAGAGCGTTTCAACAAAAATTAGG
TATTACATTTACAAATGAAAAATTATTAATTCAAGCATTTACGCATTCATCGTATGTGAATGAGCATCGAAAAAAGCCAC
ATGAAGATAATGAACGCCTTGAGTTTCTTGGCGATGCTGTATTAGAGTTAACTGTATCACAGTATCTGTTTCAAAAATAT
CCGACAATGAGTGAAGGGGAGTTAACAAAGCTGCGTGCAGCTATTGTTTGTGAGCCATCTCTTGTGCGTTTTGCCAATGA
ACTATCATTCGGTAGCCTCGTCTTATTAGGAAAAGGAGAAGAAATGACAGGCGGACGTGAACGACCAGCTTTATTAGCGG
ATGTCTTTGAAGCGTTTATTGGTGCCCTTTATCTTGATCAAGGATTAGATACAGTTTGGGGATTTTTAAAAGAAATTGTA
TATCCGAAAATTAACGAAGGTGCTTTTTCTCATGTGATGGATTATAAGAGTCAATTGCAGGAATTGATTCAACGTGATGG
TAGCGGCAATATAGAGTACCAAATCTTACAAGAAAAAGGACCTGCTCATAATCGAGAGTTCGTGTCTCGCGTTACATTAA
ATAGTGTAGCCCTTGGTCTTGGAAGTGGCAAATCGAAAAAAGAAGCAGAACAACAAGCTGCTGCAGAAGCGTTGAGAAAA
TTAAAAGAACAATCATAA

Upstream 100 bases:

>100_bases
CTGTTGGCGATGCTGTGACTTACATAGAGAGTCATCTATAATGTTTGAGTGAAGTCCCGTTTTTTGGCGGGGCTTTCTCG
GCTTATATCTGGAGGGACCT

Downstream 100 bases:

>100_bases
GGAATCCCCCTCATGTAAAGGGGGATTCCTTATGCATAGAGTGAAACTTTCTTTTTTATGTTAAGTGAATAGGAAAGTCT
GTGCATAAAATAAGTTTATT

Product: ribonuclease III

Products: NA

Alternate protein names: Ribonuclease III; RNase III [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MPYRKYREKKYEAKYREAFRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKY
PTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTVWGFLKEIV
YPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNSVALGLGSGKSKKEAEQQAAAEALRK
LKEQS

Sequences:

>Translated_245_residues
MPYRKYREKKYEAKYREAFRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKY
PTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTVWGFLKEIV
YPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNSVALGLGSGKSKKEAEQQAAAEALRK
LKEQS
>Mature_244_residues
PYRKYREKKYEAKYREAFRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYP
TMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTVWGFLKEIVY
PKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNSVALGLGSGKSKKEAEQQAAAEALRKL
KEQS

Specific function: Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs [H]

COG id: COG0571

COG function: function code K; dsRNA-specific ribonuclease

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

Organism=Homo sapiens, GI155030236, Length=225, Percent_Identity=33.7777777777778, Blast_Score=118, Evalue=6e-27,
Organism=Homo sapiens, GI155030234, Length=225, Percent_Identity=33.7777777777778, Blast_Score=117, Evalue=7e-27,
Organism=Escherichia coli, GI1788920, Length=223, Percent_Identity=35.4260089686099, Blast_Score=125, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI193202651, Length=237, Percent_Identity=33.7552742616034, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17506883, Length=237, Percent_Identity=33.7552742616034, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17552834, Length=176, Percent_Identity=30.6818181818182, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6323895, Length=220, Percent_Identity=28.6363636363636, Blast_Score=73, Evalue=5e-14,
Organism=Drosophila melanogaster, GI17137682, Length=229, Percent_Identity=31.0043668122271, Blast_Score=103, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001159
- InterPro:   IPR014720
- InterPro:   IPR000999
- InterPro:   IPR011907 [H]

Pfam domain/function: PF00035 dsrm; PF00636 Ribonuclease_3 [H]

EC number: =3.1.26.3 [H]

Molecular weight: Translated: 27908; Mature: 27777

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50137 DS_RBD ; PS00517 RNASE_3_1 ; PS50142 RNASE_3_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYRKYREKKYEAKYREAFRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCEEEHHHHHHHHHHHHHCCCCCCHHHH
EFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGE
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCC
EMTGGRERPALLADVFEAFIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQ
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNSVALGLGSGKSKKEAEQQAAAEALRK
HHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LKEQS
HHCCC
>Mature Secondary Structure 
PYRKYREKKYEAKYREAFRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERL
CCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCEEEHHHHHHHHHHHHHCCCCCCHHHH
EFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGE
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCC
EMTGGRERPALLADVFEAFIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQ
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNSVALGLGSGKSKKEAEQQAAAEALRK
HHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LKEQS
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA