Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 152976160

GI number: 152976160

Start: 2540904

End: 2542055

Strand: Reverse

Name: ydcM [C]

Synonym: Bcer98_2446

Alternate gene names: 152976160

Gene position: 2542055-2540904 (Counterclockwise)

Preceding gene: 152976161

Following gene: 152976159

Centisome position: 62.2

GC content: 36.46

Gene sequence:

>1152_bases
ATGTTAGTTAACAAAGTGTATAAGTTTCGTATCTATCCAAACAAGGGGCAAGAAATTCTAATTGCAAAAACAATCGGTTG
TTCACGTTTTGTATTCAATCATTTTTTAGTACAATGGAATGACGCATACAAAGAGACAGGCAAAGGATTAACTTATAACA
CTTGCTCTTCTCAATTAACACAACTAAAGAAAGAATTAGTTTGGTTAAAAGAAGTAGACAGCACATCACTGCAATCATCA
CTCAAAAACCTTGCTGATTCGTATACTCGATTCTTCAAGAAACAAAACAAAGCACCGCGTTTCAAGTCTAAAAAGAATAA
AGTGCAATCCTACACGACAAAGCATACGAATGGAAATATTGCGATTGCGGGTAACAAAATCAAGTTACCTAAACTTGGAT
TAGTTAAGTTTGCGAAAAGTCGTGAAGTAGAAGGACGTATTCTTCATGCTACAATGAGACGAAATCCAAGTGGCAAGTAT
TTTGTTTCGATTCTTGCTGAAACAAACGTTCAAGGACTTCCTAAAACTGGGTCGTCTGTTGGTGTGGATGTGGGTCTGAA
AGATTTTGCGATTCTTTCAACGGGAGAAGTATTTAGCAATCCTAAATGGTTTCGCCAACTGGAAGAAAAATTAGCGAAAG
CACAGCGTGTTCTTTCCAGACGACAGGAATTGGCATTAAAACGAAAATGTAAACTGGATGAAGCAAAAAACTATCAAAAG
CAAAAACGTAAAGTAGCTCGCATCCATGAGAACATCACGAATGCAAGAACAGACTATTTGCAAAAAATCTCTACTTATAT
TGTCAAAAACCACGACATCATTGGTATGGAAGATTTGCAAGTGTCAAATATGTTGAAGAATCATAAGTTAGCTAAAGCCA
TTAGTGAAGTGAGTTGGTCGCAATTCAGAACGATGTTAGCGTACAAGGCAAGATGGTACGGTAAACAAGTAGTTACTGTA
TCTAAAACATTTGCAAGTTCTCAATTGTGTTCAGTTTGTGGCTACCAAAATAAAGACGTTAAGAATCTTAAACTTAGAGA
ATGGACTTGCCCTAAATGTAATAGTCATCACGATAGAGATATTAACGCAGGACAAAATCTTAAAAATGAAGCAATAAGAC
TTCTAACCGTAGGGACTACGGGGATAGCCTAA

Upstream 100 bases:

>100_bases
TTAATTAATTTTGAAATACGTTCCATGCTACTTCACTTCCATTTCAGTATATACTTATGTTTGGTATATAATGAGTATAT
ACTAAAAGGAGGTGAAATCA

Downstream 100 bases:

>100_bases
TCAATAACTAACCGTTAGGTTGGTGTTCTTAGGAATCTCCCACTTCAAACAGCTCGTAAGAGTGTTAAGTGGGGGTAGTT
CAAAAAAGTGTTATTGCTAC

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MLVNKVYKFRIYPNKGQEILIAKTIGCSRFVFNHFLVQWNDAYKETGKGLTYNTCSSQLTQLKKELVWLKEVDSTSLQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNIAIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKY
FVSILAETNVQGLPKTGSSVGVDVGLKDFAILSTGEVFSNPKWFRQLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNHKLAKAISEVSWSQFRTMLAYKARWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLKLREWTCPKCNSHHDRDINAGQNLKNEAIRLLTVGTTGIA

Sequences:

>Translated_383_residues
MLVNKVYKFRIYPNKGQEILIAKTIGCSRFVFNHFLVQWNDAYKETGKGLTYNTCSSQLTQLKKELVWLKEVDSTSLQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNIAIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKY
FVSILAETNVQGLPKTGSSVGVDVGLKDFAILSTGEVFSNPKWFRQLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNHKLAKAISEVSWSQFRTMLAYKARWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLKLREWTCPKCNSHHDRDINAGQNLKNEAIRLLTVGTTGIA
>Mature_383_residues
MLVNKVYKFRIYPNKGQEILIAKTIGCSRFVFNHFLVQWNDAYKETGKGLTYNTCSSQLTQLKKELVWLKEVDSTSLQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNIAIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKY
FVSILAETNVQGLPKTGSSVGVDVGLKDFAILSTGEVFSNPKWFRQLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNHKLAKAISEVSWSQFRTMLAYKARWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLKLREWTCPKCNSHHDRDINAGQNLKNEAIRLLTVGTTGIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=372, Percent_Identity=34.4086021505376, Blast_Score=194, Evalue=7e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43764; Mature: 43764

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVNKVYKFRIYPNKGQEILIAKTIGCSRFVFNHFLVQWNDAYKETGKGLTYNTCSSQLT
CCCCEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHEECHHHHHHCCCCEECHHHHHHH
QLKKELVWLKEVDSTSLQSSLKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCCCCE
AIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKYFVSILAETNVQGLPKTGSSV
EEECCEEECCCCHHHHHHHCCCCCCEEEEHHHHCCCCCCEEEEEEECCCCCCCCCCCCCC
GVDVGLKDFAILSTGEVFSNPKWFRQLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
EEECCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNHKLAKAISEVSWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
QFRTMLAYKARWYGKQVVTVSKTFASSQLCSVCGYQNKDVKNLKLREWTCPKCNSHHDRD
HHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCC
INAGQNLKNEAIRLLTVGTTGIA
CCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MLVNKVYKFRIYPNKGQEILIAKTIGCSRFVFNHFLVQWNDAYKETGKGLTYNTCSSQLT
CCCCEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHEECHHHHHHCCCCEECHHHHHHH
QLKKELVWLKEVDSTSLQSSLKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHTNGNI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCCCCE
AIAGNKIKLPKLGLVKFAKSREVEGRILHATMRRNPSGKYFVSILAETNVQGLPKTGSSV
EEECCEEECCCCHHHHHHHCCCCCCEEEEHHHHCCCCCCEEEEEEECCCCCCCCCCCCCC
GVDVGLKDFAILSTGEVFSNPKWFRQLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
EEECCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMEDLQVSNMLKNHKLAKAISEVSWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
QFRTMLAYKARWYGKQVVTVSKTFASSQLCSVCGYQNKDVKNLKLREWTCPKCNSHHDRD
HHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCC
INAGQNLKNEAIRLLTVGTTGIA
CCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]