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The map label for this gene is ymfC [H]

Identifier: 152976158

GI number: 152976158

Start: 2537139

End: 2537864

Strand: Reverse

Name: ymfC [H]

Synonym: Bcer98_2444

Alternate gene names: 152976158

Gene position: 2537864-2537139 (Counterclockwise)

Preceding gene: 152976159

Following gene: 152976157

Centisome position: 62.1

GC content: 35.4

Gene sequence:

>726_bases
GTGTCGGTTAAATCTGATAGTCGGCATTTATATTTGCGAGTGATTGATCATATTAAAGAGAAAATCAAAAGTGGAGCATA
TAAAGAAAAGCAAAAGTTACCTTCTGAGTTTGATTTAGCAAAGGAACTAGGTGTAAGTAGAGCCACTTTGCGTGAAGCGC
TCCGTATTTTGGAAGAAGAAAATGTCGTCATTCGTAGACATGGCGTAGGAACGTTTGTGAATGCAAAGCCGTTGTTCTCT
TCTGGAATCGAACAACTTTCCAGTATTACCGATATGATTGCTAGTGCTGGAAAAACACCGGGGACTATTTTTTTATCATC
ATCTACTACAAGTTTAACAGAAGAAGAAAAAGAAAAGTTTCATAGTGAAGAAGGTTTCGAAGCAGTTATGATTGAACGTG
TTCGTACAGCAGATGGGGAACCTGTTGTATACTGTGTTGATAAATTATCAAAAGAAATATTGTCGGATTTATCAGATTAT
AATGAGGAGTCGTTGCTTACTGTTATACATAATAACACGCATAAGCGCGTAACATATGCAGTTGCTCATATTGAACCGAT
TGGATATCATCCGAAAATATCACCAATCTTGCAGTGTGAACCAGAAACGGCATTACTGATTTTAAAACAAATGCATTACG
ATCAAAATGATGAACCAATTTTGTATTCTATTAATTATTTTAGAGCAGATAAATTTAGCTTCCATGTATTACGAAAACGT
ATGTAA

Upstream 100 bases:

>100_bases
TAAAAAACTATTAATATTTATTCGACAAATTATAATATCGAGAGAAAAAGAGAAAAGAAGTCTTACATCAGAGGTCGAAT
AATTGAATGGGGGGAGTCTT

Downstream 100 bases:

>100_bases
ATCGGTTCCTTTTTAGGGAGGTGACAGCAAGAAGGAAGGGACAACAGCATAAATAGTAAATAGAAATATACATCATTTTA
GGAGGGGGTTCTAGTATGAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSVKSDSRHLYLRVIDHIKEKIKSGAYKEKQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFS
SGIEQLSSITDMIASAGKTPGTIFLSSSTTSLTEEEKEKFHSEEGFEAVMIERVRTADGEPVVYCVDKLSKEILSDLSDY
NEESLLTVIHNNTHKRVTYAVAHIEPIGYHPKISPILQCEPETALLILKQMHYDQNDEPILYSINYFRADKFSFHVLRKR
M

Sequences:

>Translated_241_residues
MSVKSDSRHLYLRVIDHIKEKIKSGAYKEKQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFS
SGIEQLSSITDMIASAGKTPGTIFLSSSTTSLTEEEKEKFHSEEGFEAVMIERVRTADGEPVVYCVDKLSKEILSDLSDY
NEESLLTVIHNNTHKRVTYAVAHIEPIGYHPKISPILQCEPETALLILKQMHYDQNDEPILYSINYFRADKFSFHVLRKR
M
>Mature_240_residues
SVKSDSRHLYLRVIDHIKEKIKSGAYKEKQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFSS
GIEQLSSITDMIASAGKTPGTIFLSSSTTSLTEEEKEKFHSEEGFEAVMIERVRTADGEPVVYCVDKLSKEILSDLSDYN
EESLLTVIHNNTHKRVTYAVAHIEPIGYHPKISPILQCEPETALLILKQMHYDQNDEPILYSINYFRADKFSFHVLRKRM

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=235, Percent_Identity=27.2340425531915, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87082252, Length=243, Percent_Identity=26.7489711934156, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27469; Mature: 27338

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKSDSRHLYLRVIDHIKEKIKSGAYKEKQKLPSEFDLAKELGVSRATLREALRILEEE
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHC
NVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMIASAGKTPGTIFLSSSTTSLTEEEKEKF
CEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
HSEEGFEAVMIERVRTADGEPVVYCVDKLSKEILSDLSDYNEESLLTVIHNNTHKRVTYA
CCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEE
VAHIEPIGYHPKISPILQCEPETALLILKQMHYDQNDEPILYSINYFRADKFSFHVLRKR
EEEEEECCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHC
M
C
>Mature Secondary Structure 
SVKSDSRHLYLRVIDHIKEKIKSGAYKEKQKLPSEFDLAKELGVSRATLREALRILEEE
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHC
NVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMIASAGKTPGTIFLSSSTTSLTEEEKEKF
CEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
HSEEGFEAVMIERVRTADGEPVVYCVDKLSKEILSDLSDYNEESLLTVIHNNTHKRVTYA
CCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEE
VAHIEPIGYHPKISPILQCEPETALLILKQMHYDQNDEPILYSINYFRADKFSFHVLRKR
EEEEEECCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHC
M
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]