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The map label for this gene is hfq [H]

Identifier: 152976106

GI number: 152976106

Start: 2477695

End: 2477919

Strand: Reverse

Name: hfq [H]

Synonym: Bcer98_2390

Alternate gene names: 152976106

Gene position: 2477919-2477695 (Counterclockwise)

Preceding gene: 152976107

Following gene: 152976103

Centisome position: 60.63

GC content: 29.78

Gene sequence:

>225_bases
ATGAAGCAATCAATCAATATTCAAGATCAATTTTTAAATCAACTACGTAAAGAAAATACGTTTGTGACGCTGTACTTATT
AAATGGTTTCCAGCTTCGTGGATTAATTAAAGGGTTTGATAACTTTACAGTTTTATTGGAAACAGAAGGTAAGCAACAGC
TTATTTATAAACACGCTATTTCTACATTTATGCCTCAAAAGAATGTTGCAATTGAATTAGAATAG

Upstream 100 bases:

>100_bases
ACAGATGGTGAAAAAACAGCAGAAATTTTGCGATATATAGAAGGAAAGCTCCAACTAAAGTCGAATAATAATTGAGTAGA
GAAAAAGAGGAGGATTCGAC

Downstream 100 bases:

>100_bases
CAAATAAATGTACATAACAAAAAAGAGCGAGAATCTCGCTCTTTTTTTATTTATCTTGCACTTTCATGGAAATAACAAGA
AACATGATTTAGGTTAAGCG

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MKQSINIQDQFLNQLRKENTFVTLYLLNGFQLRGLIKGFDNFTVLLETEGKQQLIYKHAISTFMPQKNVAIELE

Sequences:

>Translated_74_residues
MKQSINIQDQFLNQLRKENTFVTLYLLNGFQLRGLIKGFDNFTVLLETEGKQQLIYKHAISTFMPQKNVAIELE
>Mature_74_residues
MKQSINIQDQFLNQLRKENTFVTLYLLNGFQLRGLIKGFDNFTVLLETEGKQQLIYKHAISTFMPQKNVAIELE

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=70, Percent_Identity=45.7142857142857, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8662; Mature: 8662

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSINIQDQFLNQLRKENTFVTLYLLNGFQLRGLIKGFDNFTVLLETEGKQQLIYKHAI
CCCCCCCHHHHHHHHHCCCCEEEEEEECCEEEEHHCCCCCCEEEEEECCCCHHHHHHHHH
STFMPQKNVAIELE
HHHCCCCCEEEEEC
>Mature Secondary Structure
MKQSINIQDQFLNQLRKENTFVTLYLLNGFQLRGLIKGFDNFTVLLETEGKQQLIYKHAI
CCCCCCCHHHHHHHHHCCCCEEEEEEECCEEEEHHCCCCCCEEEEEECCCCHHHHHHHHH
STFMPQKNVAIELE
HHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA