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The map label for this gene is ynbA [H]

Identifier: 152976100

GI number: 152976100

Start: 2470543

End: 2471805

Strand: Reverse

Name: ynbA [H]

Synonym: Bcer98_2384

Alternate gene names: 152976100

Gene position: 2471805-2470543 (Counterclockwise)

Preceding gene: 152976103

Following gene: 152976099

Centisome position: 60.48

GC content: 37.45

Gene sequence:

>1263_bases
ATGGAAGAAAAAGAAAAAGTCATATTAGTTGGTTGTCAGTTACCACAAGATGATGATGAACGGTTTATGTATTCAATGAC
AGAACTTGCTTCGCTTGCAAAGACGGCGCGTGCAGAAGTTCTTCTTTCCACAACACAAAAGCGCCCGAAATTTCATCCAG
CCACTTATATTGGAAAAGGAAAATTAGACGAACTTGTCACGCTTTCAGAGGAATTAGAACCGGATGTTATTATATTTAAT
AATGAATTAACACCTAGTCAAATTCGTAATATATCTTCTGTTTTAGATGCGAGAGTCATTGATCGAACGCAACTCATATT
AGATATTTTTGCTCAGCGTGCAAAATCAAGAGAAGGGAAGTTGCAAGTTGAGCTGGCTCAGCTACAATATATGATGCCGC
GTCTTATGGGACAAGGATTAGTGTTATCACGGCTTGGAGGTGGAATTGGTACGCGAGGCCCAGGTGAAACGAAACTGGAA
ACAGATCGAAGACATATTCGGTCTCGTATTGATGAAATTAAGAAGCAGTTAGCAGTCGTTGTAGAGCATCGAAAAAGATA
TCGCGAACGACGAAAAAATAATCAAACATTCCAAGTAGCATTAATTGGTTATACGAATGCCGGAAAGTCTACGTTATTTA
ATAGATTAACGGAAGCAGATACATTCGAAGAAAATTTACTGTTTGCAACGTTAGATCCAACGACAAGAAAAATGCAATTA
CCTTGTGGTTATACGGTATTGCTTACTGATACAGTTGGATTTATTCAAGATTTACCGACTTCATTAGTTGCCGCGTTTCG
TTCGACTTTGGAAGAGGCCGGCGAAGCTGATGTGATTTTACATGTTGTTGATGCTGCAGATCCGAATTATGCAGGGCATG
AACAAACAGTAAAACAATTATTAACGGAACTTGGGATTGATCATATTCCGGTTATTACAGTGTATAACAAGAAAGACAAA
TTACATCAAAATTTTATTCCATTTCCGAAAAGCGATTTTCTTATGACAAGTGCATTTCAAGAAAATGACTTATTCAATTT
AAAACAGGCAGTGGAAAAGAAAATGATTGAAGAGATGGAACCGTATAAAGTTAAGATTCCTCCAAGTGAGGGGAGGTTGT
TGGCGCTTTTAAAAACGGATACGGTATTAACGAGTATGGTATTTAAAGAAACTGAATTGTTATACGAGTGTACAGGGTAT
ATATTTACTCATTCTGCACTCAACGAATCACTGCAAAGATTTTTAGTGGGAAAAGGAGAATAG

Upstream 100 bases:

>100_bases
CATGCCATGAATTTTCTCCCCCGCTAACTAGATGAAATGTGCTTCCTCTGCTATTATATTAGAAGGCTTAAAATTCGAAA
AGGATGAGTGAATATATTTG

Downstream 100 bases:

>100_bases
AAGCATCATGTTTGATCGTTTGAAAAATGGAGAAAAACTTGCCCCAATTGTAAAAGAAATAGAAAGTCAAATTCAAGACA
TACATAAACGTGTGGATGAA

Product: small GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MEEKEKVILVGCQLPQDDDERFMYSMTELASLAKTARAEVLLSTTQKRPKFHPATYIGKGKLDELVTLSEELEPDVIIFN
NELTPSQIRNISSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYMMPRLMGQGLVLSRLGGGIGTRGPGETKLE
TDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKNNQTFQVALIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMQL
PCGYTVLLTDTVGFIQDLPTSLVAAFRSTLEEAGEADVILHVVDAADPNYAGHEQTVKQLLTELGIDHIPVITVYNKKDK
LHQNFIPFPKSDFLMTSAFQENDLFNLKQAVEKKMIEEMEPYKVKIPPSEGRLLALLKTDTVLTSMVFKETELLYECTGY
IFTHSALNESLQRFLVGKGE

Sequences:

>Translated_420_residues
MEEKEKVILVGCQLPQDDDERFMYSMTELASLAKTARAEVLLSTTQKRPKFHPATYIGKGKLDELVTLSEELEPDVIIFN
NELTPSQIRNISSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYMMPRLMGQGLVLSRLGGGIGTRGPGETKLE
TDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKNNQTFQVALIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMQL
PCGYTVLLTDTVGFIQDLPTSLVAAFRSTLEEAGEADVILHVVDAADPNYAGHEQTVKQLLTELGIDHIPVITVYNKKDK
LHQNFIPFPKSDFLMTSAFQENDLFNLKQAVEKKMIEEMEPYKVKIPPSEGRLLALLKTDTVLTSMVFKETELLYECTGY
IFTHSALNESLQRFLVGKGE
>Mature_420_residues
MEEKEKVILVGCQLPQDDDERFMYSMTELASLAKTARAEVLLSTTQKRPKFHPATYIGKGKLDELVTLSEELEPDVIIFN
NELTPSQIRNISSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYMMPRLMGQGLVLSRLGGGIGTRGPGETKLE
TDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKNNQTFQVALIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMQL
PCGYTVLLTDTVGFIQDLPTSLVAAFRSTLEEAGEADVILHVVDAADPNYAGHEQTVKQLLTELGIDHIPVITVYNKKDK
LHQNFIPFPKSDFLMTSAFQENDLFNLKQAVEKKMIEEMEPYKVKIPPSEGRLLALLKTDTVLTSMVFKETELLYECTGY
IFTHSALNESLQRFLVGKGE

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133118, Length=217, Percent_Identity=31.3364055299539, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI310133116, Length=145, Percent_Identity=37.2413793103448, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI310124269, Length=212, Percent_Identity=31.6037735849057, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI310124267, Length=212, Percent_Identity=31.6037735849057, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI310124171, Length=212, Percent_Identity=31.6037735849057, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI310124169, Length=212, Percent_Identity=31.6037735849057, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI1790615, Length=375, Percent_Identity=42.9333333333333, Blast_Score=279, Evalue=2e-76,
Organism=Caenorhabditis elegans, GI17561038, Length=285, Percent_Identity=31.5789473684211, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24650079, Length=285, Percent_Identity=35.0877192982456, Blast_Score=129, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47641; Mature: 47641

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKEKVILVGCQLPQDDDERFMYSMTELASLAKTARAEVLLSTTQKRPKFHPATYIGKG
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC
KLDELVTLSEELEPDVIIFNNELTPSQIRNISSVLDARVIDRTQLILDIFAQRAKSREGK
CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LQVELAQLQYMMPRLMGQGLVLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVV
EEEHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VEHRKRYRERRKNNQTFQVALIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMQL
HHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHCCEEEEEECCCCCEEEC
PCGYTVLLTDTVGFIQDLPTSLVAAFRSTLEEAGEADVILHVVDAADPNYAGHEQTVKQL
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHH
LTELGIDHIPVITVYNKKDKLHQNFIPFPKSDFLMTSAFQENDLFNLKQAVEKKMIEEME
HHHCCCCCCCEEEEECCHHHHHHCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHHCC
PYKVKIPPSEGRLLALLKTDTVLTSMVFKETELLYECTGYIFTHSALNESLQRFLVGKGE
CEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEEKEKVILVGCQLPQDDDERFMYSMTELASLAKTARAEVLLSTTQKRPKFHPATYIGKG
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC
KLDELVTLSEELEPDVIIFNNELTPSQIRNISSVLDARVIDRTQLILDIFAQRAKSREGK
CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LQVELAQLQYMMPRLMGQGLVLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVV
EEEHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VEHRKRYRERRKNNQTFQVALIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMQL
HHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHCCEEEEEECCCCCEEEC
PCGYTVLLTDTVGFIQDLPTSLVAAFRSTLEEAGEADVILHVVDAADPNYAGHEQTVKQL
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHH
LTELGIDHIPVITVYNKKDKLHQNFIPFPKSDFLMTSAFQENDLFNLKQAVEKKMIEEME
HHHCCCCCCCEEEEECCHHHHHHCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHHCC
PYKVKIPPSEGRLLALLKTDTVLTSMVFKETELLYECTGYIFTHSALNESLQRFLVGKGE
CEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]