Click here to switch to the map view.

The map label for this gene is ykfC [H]

Identifier: 152975911

GI number: 152975911

Start: 2268522

End: 2268803

Strand: Reverse

Name: ykfC [H]

Synonym: Bcer98_2182

Alternate gene names: 152975911

Gene position: 2268803-2268522 (Counterclockwise)

Preceding gene: 152975912

Following gene: 152975910

Centisome position: 55.51

GC content: 42.55

Gene sequence:

>282_bases
ATGTGTACGAGAATTGGCAAATCATTCGCGAGCAAAATTGAGGAAGGAACATATATACCTTCTCCTGTCCGTCGTATCGA
AATCCCGAAACCAAACGGAGGAGTAAGGGTATTAGGTATCCCAACCGTGACAGACCGCTTCATCCAACAAGCAATCTCTC
AAATCTTAACTCCCATATTTGATCCTACGTTTTCACCAAATAGCTATGGCTTTCGCCCGAATAAAAGAGGACATGATGCC
GTAAGGAAAGCGAGAATGTATATAAAGGAAGGGTACAAATAG

Upstream 100 bases:

>100_bases
AACAACTATTGTCACGGGAAACCTTAATCATGGCTCTGAAAAGAGTCGAACAAAGGGAGTCATGGAATCGACAACATGCC
CGTAACATTCCTACGAAGGC

Downstream 100 bases:

>100_bases
GTAATAGACATGGATTTAGAGAAATTCTTTGACAAAGTAAACCATGGTAAATTGATGGCAATTATCGCAAAGAAAGTGAA
GGACAAACGAATACTTCGAC

Product: recombinase of Bh.Int-like element

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MCTRIGKSFASKIEEGTYIPSPVRRIEIPKPNGGVRVLGIPTVTDRFIQQAISQILTPIFDPTFSPNSYGFRPNKRGHDA
VRKARMYIKEGYK

Sequences:

>Translated_93_residues
MCTRIGKSFASKIEEGTYIPSPVRRIEIPKPNGGVRVLGIPTVTDRFIQQAISQILTPIFDPTFSPNSYGFRPNKRGHDA
VRKARMYIKEGYK
>Mature_93_residues
MCTRIGKSFASKIEEGTYIPSPVRRIEIPKPNGGVRVLGIPTVTDRFIQQAISQILTPIFDPTFSPNSYGFRPNKRGHDA
VRKARMYIKEGYK

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 10511; Mature: 10511

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTRIGKSFASKIEEGTYIPSPVRRIEIPKPNGGVRVLGIPTVTDRFIQQAISQILTPIF
CCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC
DPTFSPNSYGFRPNKRGHDAVRKARMYIKEGYK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCTRIGKSFASKIEEGTYIPSPVRRIEIPKPNGGVRVLGIPTVTDRFIQQAISQILTPIF
CCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC
DPTFSPNSYGFRPNKRGHDAVRKARMYIKEGYK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]