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The map label for this gene is dsdA [H]

Identifier: 152975768

GI number: 152975768

Start: 2122909

End: 2124303

Strand: Reverse

Name: dsdA [H]

Synonym: Bcer98_2017

Alternate gene names: 152975768

Gene position: 2124303-2122909 (Counterclockwise)

Preceding gene: 152975769

Following gene: 152975766

Centisome position: 51.98

GC content: 38.92

Gene sequence:

>1395_bases
ATGCAGATTCCAATGTTAATGAATCGTAAAATAGAGGCATTTGGGGGAGGAAATGATATGTGGGAAAAAATGATAAAAGG
AAAAACAATAAGAAAGTGGACTGAGGAGAATCCGATTTTACGGCAGTTAATCGAAACAAGTGAAGTGTTTTGGGAAAATC
CCAATTATAGTTCCTATGAAAAAGCGAGACAGGATTTTGTTTTAACGACGGAAGATGTGAAAGAAGCAGAGGCACGTTTG
CTTCGTTTTGCGCCGTATATTGCGAAAGTGTTTCCAGAAACAAAAGAGATGGATGGAATTATCGAATCTCCTCTTGTTGA
AACGATGCATATGAAGCAATATTTAGAGGATGCCTTTGCGCAGGAAATGCCAGGTAGGTTTTTATTAAAATGTGATAACA
ATTTACCAATTTCCGGATCGATAAAAGCGCGCGGCGGTATTTATGAAGTGTTGCAGCATGCAGAGAAGTTGGCGATAGAG
CACAATTTGCTTTGTGAAGAAGATCATTATGCAAAGTTAGATAGCGATAGGTTTCGAGAATTCTTTTCTCAATATTCCAT
TGCGGTTGGATCAACAGGTAATTTAGGACTAAGTATCGGTATTATGAGTGCGAAGTTAGGTTTTCAAGTAACAGTACATA
TGTCAGCTGATGCAAAGGAATGGAAAAAAGAACTGCTTCGTAATAAAGGGGTAACGGTTGTCGAATATGAATCTGATTAT
AGTAAAGCAGTAGAAGAGGGGAGAAAACAAGCAGAGCAAGATCCTCATTGTTATTTTATTGATGATGAGAACTCGAAACA
TTTATTTTTAGGTTATGCAGTTGCGGCTTCCAGGGTAAAGCAGCAGCTTGAAGATAAGAATATTAGAGTAGATAAAGACC
ATCCTTTATTTGTCTATTTGCCATGTGGTGTTGGCGGAGGACCTGGAGGAGTCGCTTTTGGCTTGAAATTACTATTTGGT
GATGCTGTACATTGTTTCTTTGCAGAACCAACACATTCACCATGCATGTTGCTCGGTTTAGTGACAGGGCTTCATGATGA
AATTGCAGTTCAAGATTTTGAGATTGATAATGTAACAGAAGCAGATGGTCTTGCGGTTGGAAGGGCATCTGGTTTTGTTG
GAAAGATTATGGAGCCGCTTCTTAGTGGTTGCTATACAGTTGAAGATCAACAACTTTATGAATTATTAAAGGCAATGGTA
GACACGGAGAATATACGCTTAGAACCGTCTGCATTAGCAGCAGTCTATGGTCCAGTGCAATTGTATCGACAAGAAAATTA
TGTGAAGAGACATAAATTAGAAGGTAAGATGAATCGTTCGACACATATGATGTGGGCAACAGGCGGTGGAATGGTACCGA
AATCCGTGTTCGATGAGTATTATCAAAATCAGTAA

Upstream 100 bases:

>100_bases
AACGTAATATCAAGCATGTTGTAGTGAAACTTCATATAGAGTATTGCTGTTTATTACTACATAGTATTTCGATTGAAAGG
ACTTACTTGGTGTTAATAAT

Downstream 100 bases:

>100_bases
ATCGTGTACAAAAAGGACGTCATTTTAAATGATGACGTCTTTTTGTTTATTTTTTCTTGTTTTTGTCTAATGGATTTTGT
TCTTCCGCAAATTCTGTTCC

Product: D-serine dehydratase

Products: NA

Alternate protein names: D-serine deaminase; DSD [H]

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MQIPMLMNRKIEAFGGGNDMWEKMIKGKTIRKWTEENPILRQLIETSEVFWENPNYSSYEKARQDFVLTTEDVKEAEARL
LRFAPYIAKVFPETKEMDGIIESPLVETMHMKQYLEDAFAQEMPGRFLLKCDNNLPISGSIKARGGIYEVLQHAEKLAIE
HNLLCEEDHYAKLDSDRFREFFSQYSIAVGSTGNLGLSIGIMSAKLGFQVTVHMSADAKEWKKELLRNKGVTVVEYESDY
SKAVEEGRKQAEQDPHCYFIDDENSKHLFLGYAVAASRVKQQLEDKNIRVDKDHPLFVYLPCGVGGGPGGVAFGLKLLFG
DAVHCFFAEPTHSPCMLLGLVTGLHDEIAVQDFEIDNVTEADGLAVGRASGFVGKIMEPLLSGCYTVEDQQLYELLKAMV
DTENIRLEPSALAAVYGPVQLYRQENYVKRHKLEGKMNRSTHMMWATGGGMVPKSVFDEYYQNQ

Sequences:

>Translated_464_residues
MQIPMLMNRKIEAFGGGNDMWEKMIKGKTIRKWTEENPILRQLIETSEVFWENPNYSSYEKARQDFVLTTEDVKEAEARL
LRFAPYIAKVFPETKEMDGIIESPLVETMHMKQYLEDAFAQEMPGRFLLKCDNNLPISGSIKARGGIYEVLQHAEKLAIE
HNLLCEEDHYAKLDSDRFREFFSQYSIAVGSTGNLGLSIGIMSAKLGFQVTVHMSADAKEWKKELLRNKGVTVVEYESDY
SKAVEEGRKQAEQDPHCYFIDDENSKHLFLGYAVAASRVKQQLEDKNIRVDKDHPLFVYLPCGVGGGPGGVAFGLKLLFG
DAVHCFFAEPTHSPCMLLGLVTGLHDEIAVQDFEIDNVTEADGLAVGRASGFVGKIMEPLLSGCYTVEDQQLYELLKAMV
DTENIRLEPSALAAVYGPVQLYRQENYVKRHKLEGKMNRSTHMMWATGGGMVPKSVFDEYYQNQ
>Mature_464_residues
MQIPMLMNRKIEAFGGGNDMWEKMIKGKTIRKWTEENPILRQLIETSEVFWENPNYSSYEKARQDFVLTTEDVKEAEARL
LRFAPYIAKVFPETKEMDGIIESPLVETMHMKQYLEDAFAQEMPGRFLLKCDNNLPISGSIKARGGIYEVLQHAEKLAIE
HNLLCEEDHYAKLDSDRFREFFSQYSIAVGSTGNLGLSIGIMSAKLGFQVTVHMSADAKEWKKELLRNKGVTVVEYESDY
SKAVEEGRKQAEQDPHCYFIDDENSKHLFLGYAVAASRVKQQLEDKNIRVDKDHPLFVYLPCGVGGGPGGVAFGLKLLFG
DAVHCFFAEPTHSPCMLLGLVTGLHDEIAVQDFEIDNVTEADGLAVGRASGFVGKIMEPLLSGCYTVEDQQLYELLKAMV
DTENIRLEPSALAAVYGPVQLYRQENYVKRHKLEGKMNRSTHMMWATGGGMVPKSVFDEYYQNQ

Specific function: Unknown

COG id: COG3048

COG function: function code E; D-serine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the serine/threonine dehydratase family. DsdA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788708, Length=424, Percent_Identity=61.7924528301887, Blast_Score=515, Evalue=1e-147,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011780
- InterPro:   IPR001926
- InterPro:   IPR000634 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.18 [H]

Molecular weight: Translated: 52463; Mature: 52463

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00165 DEHYDRATASE_SER_THR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPMLMNRKIEAFGGGNDMWEKMIKGKTIRKWTEENPILRQLIETSEVFWENPNYSSYE
CCCCHHHCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHH
KARQDFVLTTEDVKEAEARLLRFAPYIAKVFPETKEMDGIIESPLVETMHMKQYLEDAFA
HHHHCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
QEMPGRFLLKCDNNLPISGSIKARGGIYEVLQHAEKLAIEHNLLCEEDHYAKLDSDRFRE
HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
FFSQYSIAVGSTGNLGLSIGIMSAKLGFQVTVHMSADAKEWKKELLRNKGVTVVEYESDY
HHHHHEEEECCCCCCEEEEEEEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCHH
SKAVEEGRKQAEQDPHCYFIDDENSKHLFLGYAVAASRVKQQLEDKNIRVDKDHPLFVYL
HHHHHHHHHHCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCEECCCCCEEEEE
PCGVGGGPGGVAFGLKLLFGDAVHCFFAEPTHSPCMLLGLVTGLHDEIAVQDFEIDNVTE
ECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCHHHEEEEECCCCCCC
ADGLAVGRASGFVGKIMEPLLSGCYTVEDQQLYELLKAMVDTENIRLEPSALAAVYGPVQ
CCCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHH
LYRQENYVKRHKLEGKMNRSTHMMWATGGGMVPKSVFDEYYQNQ
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MQIPMLMNRKIEAFGGGNDMWEKMIKGKTIRKWTEENPILRQLIETSEVFWENPNYSSYE
CCCCHHHCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHH
KARQDFVLTTEDVKEAEARLLRFAPYIAKVFPETKEMDGIIESPLVETMHMKQYLEDAFA
HHHHCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
QEMPGRFLLKCDNNLPISGSIKARGGIYEVLQHAEKLAIEHNLLCEEDHYAKLDSDRFRE
HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
FFSQYSIAVGSTGNLGLSIGIMSAKLGFQVTVHMSADAKEWKKELLRNKGVTVVEYESDY
HHHHHEEEECCCCCCEEEEEEEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCHH
SKAVEEGRKQAEQDPHCYFIDDENSKHLFLGYAVAASRVKQQLEDKNIRVDKDHPLFVYL
HHHHHHHHHHCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCEECCCCCEEEEE
PCGVGGGPGGVAFGLKLLFGDAVHCFFAEPTHSPCMLLGLVTGLHDEIAVQDFEIDNVTE
ECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCHHHEEEEECCCCCCC
ADGLAVGRASGFVGKIMEPLLSGCYTVEDQQLYELLKAMVDTENIRLEPSALAAVYGPVQ
CCCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHH
LYRQENYVKRHKLEGKMNRSTHMMWATGGGMVPKSVFDEYYQNQ
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA