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The map label for this gene is ybiR [C]

Identifier: 152975640

GI number: 152975640

Start: 1987119

End: 1988252

Strand: Reverse

Name: ybiR [C]

Synonym: Bcer98_1874

Alternate gene names: 152975640

Gene position: 1988252-1987119 (Counterclockwise)

Preceding gene: 152975642

Following gene: 152975638

Centisome position: 48.65

GC content: 29.81

Gene sequence:

>1134_bases
GTGAAAAACGAAAAAAAAGTGAACTTGAAATTTGCAATTTTTAAAAAAGATATTGTATTTACGATATCATTCTTATTAGC
AATCGGAAGCTGTTTATTCCATGCACCAAAACTAGAATATATTAATTTTAAAGTATTAGTCAGTCTATTTAATCTTATGC
TCGTAGTTAAGGCTCTGGACGATCTGAAACTATTAGATAAGTTTGCCATTGCTATATTGAGTAAATGTCATAATAGTAAA
AGTGTTTCAACAATCCTAATTTTATTATGCTTTTTTAGTTCCATGCTTGTAACGAATGATGTGGCATTAATAACATTTGT
ACCATTAACACTTATAATCAGTAAGATGATACAAACTTCTATGTTGGATACTATTATACTAGAGACAATTGCGGCTAACA
TCGGGAGTAGCTTAACTCCTATGGGAAATCCTCAAAATCTTTTTATATTTACTAACTACGGAATCAGGCCTATAGAATTT
TTTACAACAATCCTTCTATTAGTGGTTCTTGGAATTGTTCTGTTATTATTTCTTAATCAAAGATTGAAAAGCCAACCATT
GGAAATAGAACTTCCGTCTATTTCGATAAAAAATAAAAAAGAGGCAACAGTATGGGGAATCCTATTTTGTATCATATCTG
CATCCATATTAGGATTTTTAAGCTACAAACTTGCGTTTATTATCGCATTGGGAACCGCATGTATACTTGATATAAAATTA
TTGAAGAAAATTGATTATTTACTGCTTTTTACTTTTATATGTTTTTTTATATTTATAGGAAACGTATCGGAATTAAGAGT
GGTTCAAACATTTGCAAGTGAGACTCTCAAAAGTCCCACATCTATCTTTTTCAGTTCGATTATTTTAAGCCAACTGGTAA
GCAATGTACCAGCTGCAATCTTTTTATCGAAATTCTCCGTAAATTGGCAGCCTTTATTAGTAGGGGTCAATTTAGGAGGA
CTCGGTACAATTGTTGCGTCCCTCGCAAGTGTGATTTCATTTAAACTTTTTATTAAGAGAAATCCACAAAAAAGTAAAAA
GTACCTTATAAGGTTTAGTATTTATAACTTTTCAATTTTAGCTCTTTTAACCCTTGTTTATTATATTATAATGAAAAATC
ATATTTTCTTTTAA

Upstream 100 bases:

>100_bases
ATGGTGCTTTTAAGTGCATGGAGGTGTCAAATGCAAGAAACATAGGTCTGTGGTAAAATAAATAGTACTGAAGTGGGGAT
TGACGAAAGGATATATTTAT

Downstream 100 bases:

>100_bases
AAGGTCTTTATAAACGAGAATAATAGCATTCTCGTAACAAGTGATTTCCTTCTATTAGATGATACGAAAAGAAAAGTATT
TGTAACGAAATAAAGAATGA

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKNEKKVNLKFAIFKKDIVFTISFLLAIGSCLFHAPKLEYINFKVLVSLFNLMLVVKALDDLKLLDKFAIAILSKCHNSK
SVSTILILLCFFSSMLVTNDVALITFVPLTLIISKMIQTSMLDTIILETIAANIGSSLTPMGNPQNLFIFTNYGIRPIEF
FTTILLLVVLGIVLLLFLNQRLKSQPLEIELPSISIKNKKEATVWGILFCIISASILGFLSYKLAFIIALGTACILDIKL
LKKIDYLLLFTFICFFIFIGNVSELRVVQTFASETLKSPTSIFFSSIILSQLVSNVPAAIFLSKFSVNWQPLLVGVNLGG
LGTIVASLASVISFKLFIKRNPQKSKKYLIRFSIYNFSILALLTLVYYIIMKNHIFF

Sequences:

>Translated_377_residues
MKNEKKVNLKFAIFKKDIVFTISFLLAIGSCLFHAPKLEYINFKVLVSLFNLMLVVKALDDLKLLDKFAIAILSKCHNSK
SVSTILILLCFFSSMLVTNDVALITFVPLTLIISKMIQTSMLDTIILETIAANIGSSLTPMGNPQNLFIFTNYGIRPIEF
FTTILLLVVLGIVLLLFLNQRLKSQPLEIELPSISIKNKKEATVWGILFCIISASILGFLSYKLAFIIALGTACILDIKL
LKKIDYLLLFTFICFFIFIGNVSELRVVQTFASETLKSPTSIFFSSIILSQLVSNVPAAIFLSKFSVNWQPLLVGVNLGG
LGTIVASLASVISFKLFIKRNPQKSKKYLIRFSIYNFSILALLTLVYYIIMKNHIFF
>Mature_377_residues
MKNEKKVNLKFAIFKKDIVFTISFLLAIGSCLFHAPKLEYINFKVLVSLFNLMLVVKALDDLKLLDKFAIAILSKCHNSK
SVSTILILLCFFSSMLVTNDVALITFVPLTLIISKMIQTSMLDTIILETIAANIGSSLTPMGNPQNLFIFTNYGIRPIEF
FTTILLLVVLGIVLLLFLNQRLKSQPLEIELPSISIKNKKEATVWGILFCIISASILGFLSYKLAFIIALGTACILDIKL
LKKIDYLLLFTFICFFIFIGNVSELRVVQTFASETLKSPTSIFFSSIILSQLVSNVPAAIFLSKFSVNWQPLLVGVNLGG
LGTIVASLASVISFKLFIKRNPQKSKKYLIRFSIYNFSILALLTLVYYIIMKNHIFF

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=373, Percent_Identity=25.7372654155496, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 42265; Mature: 42265

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNEKKVNLKFAIFKKDIVFTISFLLAIGSCLFHAPKLEYINFKVLVSLFNLMLVVKALD
CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
DLKLLDKFAIAILSKCHNSKSVSTILILLCFFSSMLVTNDVALITFVPLTLIISKMIQTS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
MLDTIILETIAANIGSSLTPMGNPQNLFIFTNYGIRPIEFFTTILLLVVLGIVLLLFLNQ
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLKSQPLEIELPSISIKNKKEATVWGILFCIISASILGFLSYKLAFIIALGTACILDIKL
HHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKIDYLLLFTFICFFIFIGNVSELRVVQTFASETLKSPTSIFFSSIILSQLVSNVPAAI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHH
FLSKFSVNWQPLLVGVNLGGLGTIVASLASVISFKLFIKRNPQKSKKYLIRFSIYNFSIL
HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEEHHHHHH
ALLTLVYYIIMKNHIFF
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNEKKVNLKFAIFKKDIVFTISFLLAIGSCLFHAPKLEYINFKVLVSLFNLMLVVKALD
CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
DLKLLDKFAIAILSKCHNSKSVSTILILLCFFSSMLVTNDVALITFVPLTLIISKMIQTS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
MLDTIILETIAANIGSSLTPMGNPQNLFIFTNYGIRPIEFFTTILLLVVLGIVLLLFLNQ
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLKSQPLEIELPSISIKNKKEATVWGILFCIISASILGFLSYKLAFIIALGTACILDIKL
HHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKIDYLLLFTFICFFIFIGNVSELRVVQTFASETLKSPTSIFFSSIILSQLVSNVPAAI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHH
FLSKFSVNWQPLLVGVNLGGLGTIVASLASVISFKLFIKRNPQKSKKYLIRFSIYNFSIL
HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEEHHHHHH
ALLTLVYYIIMKNHIFF
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]