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The map label for this gene is yocR [H]

Identifier: 152975237

GI number: 152975237

Start: 1542751

End: 1544088

Strand: Direct

Name: yocR [H]

Synonym: Bcer98_1440

Alternate gene names: 152975237

Gene position: 1542751-1544088 (Clockwise)

Preceding gene: 152975235

Following gene: 152975238

Centisome position: 37.75

GC content: 34.38

Gene sequence:

>1338_bases
ATGAATTCACCGCAATGGACATCAAAATTAGGTTTTGTATTAGCTGCTGCAGGTTCAGCAATTGGACTTGGGGCAATTTG
GAAGTTCCCTTATATGGCCGGGATTGGAGGCGGCGGAGCATTTTTTCTTATTTTTATCGGTTTTACATTATTAATTGGTT
TACCGCTCTTATTAGCTGAATTTGTAATTGGGAGGAGTACGCAAAAAGAAGCTGTTGATGCATATAGACAAATTGCTCCT
AAAACATTATGGCCATGGCTAGGTAAATTAGGTGTTGTAACATGTTTCATATTACTTTCATTCTATAGTGTAGTAGGTGG
TTGGATTTTATTATATTTATGGAATGCAATTACAGGAAGGTTATGGGAAGGAAATGGTGCATATGAAGCAACATTTGGTG
AAATCATTTCCAATCCTTATTTAGCAGTTGGATCACAGTTATTATTTATTCTTATGACGATTTTCATTGTAAGTAAAGGT
GTACAAAACGGTGTGGAAAAAGTAAATAAATATTTTATGCCTGCGCTATTTGTTTTATTCTTTATATTAATTATTCGTGC
TCTTACATTAGATGGAGCTGGAGAAGGAGTTCGTTTCTTCTTGCAACCAGATTTCTCAAATGTGACATCGGAAATTATTT
TATATGCAATGGGTCAATCGTTCTTTTCATTATCTGTTGGTGTAGCAGTAATGGTAACGTATAGTTCATACTTACCGAAG
GAAGAAAGTCTACCGCGTTCGGCATTTTCAATTGTAGGACTAACACTTATGATTACATTGCTTGCAGGACTTGCTATTTT
CCCAGTTGTATTTGCATTTGGAATGGAACCGTCACAAGGACCAGGATTATTATTTATCGTATTACCTGCTATTTTCAGTA
AAATGGCGTTTGGAAAAGTATTCTTCGTTATTTTCTTATTACTATTCTTCTTTGCAACAGTTACGTCAGCTATTTCTATG
TTAGAAATTAGTGTTGCATCGTTAACAGCAAAAGGAAATGGGAGACGCGAGAAGTTTGCAATCATTGTAGGGTTATTGAT
TTTTGTAGTAGGTATTCCATCGGCATTATCATACGGTGTATTGAGTGATTTTAAGGTTTTTGGAAAGACAGTTTTCGATT
TAGCAGATTTTGCAGTAAGTAATGTACTGATGCCGCTTGGTGTATTGTTAGTTTCTATATTCGTTCCATTAAAAATGAAG
AAAGATGTATTAATGAGAGAGCTTGGTGTAAGTAAACATAAAGGATATACATTATTCATACTATGGTTATTCTTACTTCG
TTATATCGCACCAGTCGCTATCATTATTGTATTTTTAAATGTAATTGGAGTTATTTAA

Upstream 100 bases:

>100_bases
TTGCGTAGGGAGTTTTTTTATTTAAAGAGGAGGAGATTCTACTAGAAATAGCTAATGTTAGAACGCAATGAATAAAGAGA
AATAGAGAGGAGATTACAAT

Downstream 100 bases:

>100_bases
AGAAATGGTGGAATATTCAAATGTATAAAGGTGCAAGAAGGAAACAAATATCATATAATGAAACCATAAATGGTATATTG
GAGGTGTTTTTATGGCGATT

Product: sodium:neurotransmitter symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MNSPQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYRQIAP
KTLWPWLGKLGVVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILMTIFIVSKG
VQNGVEKVNKYFMPALFVLFFILIIRALTLDGAGEGVRFFLQPDFSNVTSEIILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVGLTLMITLLAGLAIFPVVFAFGMEPSQGPGLLFIVLPAIFSKMAFGKVFFVIFLLLFFFATVTSAISM
LEISVASLTAKGNGRREKFAIIVGLLIFVVGIPSALSYGVLSDFKVFGKTVFDLADFAVSNVLMPLGVLLVSIFVPLKMK
KDVLMRELGVSKHKGYTLFILWLFLLRYIAPVAIIIVFLNVIGVI

Sequences:

>Translated_445_residues
MNSPQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYRQIAP
KTLWPWLGKLGVVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILMTIFIVSKG
VQNGVEKVNKYFMPALFVLFFILIIRALTLDGAGEGVRFFLQPDFSNVTSEIILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVGLTLMITLLAGLAIFPVVFAFGMEPSQGPGLLFIVLPAIFSKMAFGKVFFVIFLLLFFFATVTSAISM
LEISVASLTAKGNGRREKFAIIVGLLIFVVGIPSALSYGVLSDFKVFGKTVFDLADFAVSNVLMPLGVLLVSIFVPLKMK
KDVLMRELGVSKHKGYTLFILWLFLLRYIAPVAIIIVFLNVIGVI
>Mature_445_residues
MNSPQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYRQIAP
KTLWPWLGKLGVVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILMTIFIVSKG
VQNGVEKVNKYFMPALFVLFFILIIRALTLDGAGEGVRFFLQPDFSNVTSEIILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVGLTLMITLLAGLAIFPVVFAFGMEPSQGPGLLFIVLPAIFSKMAFGKVFFVIFLLLFFFATVTSAISM
LEISVASLTAKGNGRREKFAIIVGLLIFVVGIPSALSYGVLSDFKVFGKTVFDLADFAVSNVLMPLGVLLVSIFVPLKMK
KDVLMRELGVSKHKGYTLFILWLFLLRYIAPVAIIIVFLNVIGVI

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=401, Percent_Identity=25.6857855361596, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI171184408, Length=404, Percent_Identity=25.7425742574257, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI171184406, Length=404, Percent_Identity=25.7425742574257, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI171184404, Length=404, Percent_Identity=25.7425742574257, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI7657587, Length=403, Percent_Identity=25.0620347394541, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI188528618, Length=417, Percent_Identity=25.1798561151079, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI197276623, Length=448, Percent_Identity=25, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI54607094, Length=448, Percent_Identity=25, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI134304856, Length=402, Percent_Identity=26.3681592039801, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI4507043, Length=395, Percent_Identity=24.8101265822785, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI4507041, Length=453, Percent_Identity=23.841059602649, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI289191351, Length=380, Percent_Identity=24.4736842105263, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI4557046, Length=380, Percent_Identity=24.4736842105263, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI289191377, Length=380, Percent_Identity=24.4736842105263, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI33354281, Length=304, Percent_Identity=26.3157894736842, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI194018524, Length=301, Percent_Identity=29.5681063122924, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI58219014, Length=302, Percent_Identity=25.8278145695364, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI51468073, Length=409, Percent_Identity=24.2053789731051, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI11181770, Length=294, Percent_Identity=26.530612244898, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI21361693, Length=112, Percent_Identity=35.7142857142857, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI12408638, Length=270, Percent_Identity=26.2962962962963, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI5032097, Length=346, Percent_Identity=24.8554913294798, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI55749589, Length=289, Percent_Identity=25.9515570934256, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI197276625, Length=117, Percent_Identity=35.042735042735, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI92859670, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI218563756, Length=346, Percent_Identity=24.5664739884393, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI300360519, Length=222, Percent_Identity=24.7747747747748, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=437, Percent_Identity=24.7139588100687, Blast_Score=118, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17555248, Length=427, Percent_Identity=26.2295081967213, Blast_Score=111, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17554804, Length=467, Percent_Identity=23.5546038543897, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71995588, Length=415, Percent_Identity=22.8915662650602, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI212642127, Length=420, Percent_Identity=22.3809523809524, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI133952791, Length=244, Percent_Identity=30.327868852459, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17542050, Length=120, Percent_Identity=30.8333333333333, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17136952, Length=411, Percent_Identity=25.3041362530414, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI281364394, Length=413, Percent_Identity=25.90799031477, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI28574704, Length=413, Percent_Identity=25.90799031477, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI17136950, Length=413, Percent_Identity=25.90799031477, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI28574702, Length=413, Percent_Identity=25.90799031477, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24762620, Length=419, Percent_Identity=28.1622911694511, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24639514, Length=505, Percent_Identity=24.5544554455446, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI221329674, Length=504, Percent_Identity=24.6031746031746, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI45550877, Length=515, Percent_Identity=23.8834951456311, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI45551183, Length=424, Percent_Identity=25.4716981132075, Blast_Score=108, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24639516, Length=525, Percent_Identity=23.6190476190476, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI281365034, Length=409, Percent_Identity=25.1833740831296, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24661428, Length=368, Percent_Identity=27.7173913043478, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24654186, Length=528, Percent_Identity=24.2424242424242, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24655079, Length=304, Percent_Identity=27.3026315789474, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI45551088, Length=372, Percent_Identity=25.2688172043011, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24652942, Length=372, Percent_Identity=25.2688172043011, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI19921936, Length=396, Percent_Identity=25.5050505050505, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI281363702, Length=362, Percent_Identity=26.5193370165746, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24639853, Length=510, Percent_Identity=24.7058823529412, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24582567, Length=338, Percent_Identity=26.0355029585799, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281363700, Length=336, Percent_Identity=26.4880952380952, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI19921352, Length=212, Percent_Identity=29.2452830188679, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24584353, Length=212, Percent_Identity=29.2452830188679, Blast_Score=79, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48536; Mature: 48536

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]