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The map label for this gene is ycgE [H]

Identifier: 152975012

GI number: 152975012

Start: 1325688

End: 1326596

Strand: Direct

Name: ycgE [H]

Synonym: Bcer98_1212

Alternate gene names: 152975012

Gene position: 1325688-1326596 (Clockwise)

Preceding gene: 152975011

Following gene: 152975013

Centisome position: 32.44

GC content: 34.98

Gene sequence:

>909_bases
ATGATGCCAACTTTAAAAGGAAAATATAATATAAAAGCAGTTTCAAAGATGCTTGGGATTCAACCGAGTACACTTAGAGC
GTGGGAAAGACGCTATCATATTGTTGCCCCAAAACGAAATGATGCGGGGCATCGATTATATACAGAGGAACATATACAAA
TCTTAAAATGGTTAATAGACCAGGTGAATAAAGGGATTGCAATTGGACAAGCTGTGCAAATATTAGAGAGAAATCGGTTG
CAAAATCACAATGAAATAGAAATGGCATATAATAAAGAAATGCTTTTGGTAGACGATATCCTACATTCTTTGCTAAAATT
TGATGAAGTAAAAGCTTCTGCATTCGTAAATGAGGCATTTAGTATATATCCAATTGAAAAGGTGATTACACACATATTTC
TCGAAATTACAAAACAGTTGGAGAAGTTAGAAGGAACAAATCAAGTTACAATGGTACAAATGCAATATGTAGAATCATTT
TTAGGCACGCGTATAGGTATGATTTATCATAACGCGTATGTACCGAAGTCCTCAGCTTTACAAAGTGTTTTCGCATTTTG
TGGACCGGGAGAAGTTCAGGCATTACAGCTGTTTATTTTAACAGTCTATTTACGATTGAAAGGTTACCAAACTATATATA
TTGGGACAGGCTTGCAAGAAGAAAAAATCAATGAAACGATTGTACAATTGGAACCGGATTATGTAGTGATATCTTGTTTA
CAAATGAAACATGTGCAAGATACGATGCATTTAGCTCAAAGCTTGCAAACTCAGCATGAAAAGCTTAGTATAGCTCTTCT
TGGATCAGCCATCACACATATTTCAACAGACCAGCCATTTGAGAGTGAGTATGTATTTATAGGAAGTACAAAAGAAGAGT
GGGATGAATGGTTAAAAATGTCAGAATAG

Upstream 100 bases:

>100_bases
ACGACACTTGTCCCGCTTCGTTTCCGAGCACCTGCTCAAACCCATATCATTACTTTAAAGCAAAAGGAATAGGAGATTTT
TAATTTTTAAGGTGGGGGAA

Downstream 100 bases:

>100_bases
TTGTTCGAAAAGAACCATCTATTTCTCATTTCATATAATAAAAATTAGAAGCGATGGTTTTACGTAAGGAGGTTATAAGA
TGAGGTTGGAACGCTTGAAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MMPTLKGKYNIKAVSKMLGIQPSTLRAWERRYHIVAPKRNDAGHRLYTEEHIQILKWLIDQVNKGIAIGQAVQILERNRL
QNHNEIEMAYNKEMLLVDDILHSLLKFDEVKASAFVNEAFSIYPIEKVITHIFLEITKQLEKLEGTNQVTMVQMQYVESF
LGTRIGMIYHNAYVPKSSALQSVFAFCGPGEVQALQLFILTVYLRLKGYQTIYIGTGLQEEKINETIVQLEPDYVVISCL
QMKHVQDTMHLAQSLQTQHEKLSIALLGSAITHISTDQPFESEYVFIGSTKEEWDEWLKMSE

Sequences:

>Translated_302_residues
MMPTLKGKYNIKAVSKMLGIQPSTLRAWERRYHIVAPKRNDAGHRLYTEEHIQILKWLIDQVNKGIAIGQAVQILERNRL
QNHNEIEMAYNKEMLLVDDILHSLLKFDEVKASAFVNEAFSIYPIEKVITHIFLEITKQLEKLEGTNQVTMVQMQYVESF
LGTRIGMIYHNAYVPKSSALQSVFAFCGPGEVQALQLFILTVYLRLKGYQTIYIGTGLQEEKINETIVQLEPDYVVISCL
QMKHVQDTMHLAQSLQTQHEKLSIALLGSAITHISTDQPFESEYVFIGSTKEEWDEWLKMSE
>Mature_302_residues
MMPTLKGKYNIKAVSKMLGIQPSTLRAWERRYHIVAPKRNDAGHRLYTEEHIQILKWLIDQVNKGIAIGQAVQILERNRL
QNHNEIEMAYNKEMLLVDDILHSLLKFDEVKASAFVNEAFSIYPIEKVITHIFLEITKQLEKLEGTNQVTMVQMQYVESF
LGTRIGMIYHNAYVPKSSALQSVFAFCGPGEVQALQLFILTVYLRLKGYQTIYIGTGLQEEKINETIVQLEPDYVVISCL
QMKHVQDTMHLAQSLQTQHEKLSIALLGSAITHISTDQPFESEYVFIGSTKEEWDEWLKMSE

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=132, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788448, Length=150, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 34763; Mature: 34763

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPTLKGKYNIKAVSKMLGIQPSTLRAWERRYHIVAPKRNDAGHRLYTEEHIQILKWLID
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
QVNKGIAIGQAVQILERNRLQNHNEIEMAYNKEMLLVDDILHSLLKFDEVKASAFVNEAF
HHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
SIYPIEKVITHIFLEITKQLEKLEGTNQVTMVQMQYVESFLGTRIGMIYHNAYVPKSSAL
EEECHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
QSVFAFCGPGEVQALQLFILTVYLRLKGYQTIYIGTGLQEEKINETIVQLEPDYVVISCL
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHEEECCCHHHHHHH
QMKHVQDTMHLAQSLQTQHEKLSIALLGSAITHISTDQPFESEYVFIGSTKEEWDEWLKM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCC
SE
CC
>Mature Secondary Structure
MMPTLKGKYNIKAVSKMLGIQPSTLRAWERRYHIVAPKRNDAGHRLYTEEHIQILKWLID
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
QVNKGIAIGQAVQILERNRLQNHNEIEMAYNKEMLLVDDILHSLLKFDEVKASAFVNEAF
HHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
SIYPIEKVITHIFLEITKQLEKLEGTNQVTMVQMQYVESFLGTRIGMIYHNAYVPKSSAL
EEECHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
QSVFAFCGPGEVQALQLFILTVYLRLKGYQTIYIGTGLQEEKINETIVQLEPDYVVISCL
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHEEECCCHHHHHHH
QMKHVQDTMHLAQSLQTQHEKLSIALLGSAITHISTDQPFESEYVFIGSTKEEWDEWLKM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCC
SE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]