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The map label for this gene is potC [H]

Identifier: 152974813

GI number: 152974813

Start: 1124714

End: 1125514

Strand: Direct

Name: potC [H]

Synonym: Bcer98_1009

Alternate gene names: 152974813

Gene position: 1124714-1125514 (Clockwise)

Preceding gene: 152974812

Following gene: 152974814

Centisome position: 27.52

GC content: 34.21

Gene sequence:

>801_bases
ATGAAAAAGTTTTTAGTTTCTTACTCTTGGTTAATTTTATTGTTCCTATATTTTCCAATGATGGTTTTAATGGTCTATTC
TTTTAATGATTCGCGTATTAATGCAGAATGGCAAGGGTTTACATTCCATTGGTATACAGATTTATTTCAAAAGCAAGACG
TTATTGATGCATTGGTAAATAGTATTACAATTGCTCTTATTACAACTTTCGTAACAACTGCTCTCGGTGTATTTTTTGCA
GTAGCATTACATCGTTATAAGTATCGTTTTGAAGGAGCGATAAATGGACTTGTATACTTACCCATTTTAATTCCTGATAT
TTTAATGGGATTATCTCTACTTATTTTATTTAGCCAAATTGGAATGGAGCTTGGACAAGCTACTATTATCATTGCGCATA
TTACGTTTAGTATTTCATTTGTTGTTGTGATTTTGGCAGCGCGTTTATCTAGTATGGGACATGATTTAGAAGAAGCAGCC
AATGATTTAGGAGCAACCCCTTGGCAAACGTTTCGTCATGTAACGCTTCCAAGTATTGCCCCTGGTATTATTTCCGCTGC
GTTATTAACATTTACGTTATCAATTGATGACTTTGTCATTAGTTTCTTTGTATCTGGGCCAGGATCAACAACATTGCCAC
TATATATTTACAGTATGGTCAAACGCGGAGTATCACCTGAAATTAATGCACTTTCAACAATATTAATTGTTGTCATTGTT
GGATTAATGATTGCATCAGAAATATTTCGTAATAAAGGAGCGGATGGAGAAGAAAACTCCGGAGGGCATCTTCCTTTATA
A

Upstream 100 bases:

>100_bases
ATTATCGATTATTGTCGTCCTATTCTCTGTTCTATTAATTTACTTATATTATCGTGCGACGAAAGTATATAAATATGGAA
ACGGAGGGGAATAGTACGCG

Downstream 100 bases:

>100_bases
AAACAGACAGAGGAGGTCGTGAATCGATGAAATTAATGAAGACGATAGCCGGCGCAGCCATTAGTTTTAGCCTTGTAGCA
GGTGTACTTGCAGGATGCGG

Product: ornithine carbamoyltransferase

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWQGFTFHWYTDLFQKQDVIDALVNSITIALITTFVTTALGVFFA
VALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQIGMELGQATIIIAHITFSISFVVVILAARLSSMGHDLEEAA
NDLGATPWQTFRHVTLPSIAPGIISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV
GLMIASEIFRNKGADGEENSGGHLPL

Sequences:

>Translated_266_residues
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWQGFTFHWYTDLFQKQDVIDALVNSITIALITTFVTTALGVFFA
VALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQIGMELGQATIIIAHITFSISFVVVILAARLSSMGHDLEEAA
NDLGATPWQTFRHVTLPSIAPGIISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV
GLMIASEIFRNKGADGEENSGGHLPL
>Mature_266_residues
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWQGFTFHWYTDLFQKQDVIDALVNSITIALITTFVTTALGVFFA
VALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQIGMELGQATIIIAHITFSISFVVVILAARLSSMGHDLEEAA
NDLGATPWQTFRHVTLPSIAPGIISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV
GLMIASEIFRNKGADGEENSGGHLPL

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=236, Percent_Identity=42.7966101694915, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1787081, Length=238, Percent_Identity=45.7983193277311, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI1787714, Length=257, Percent_Identity=32.295719844358, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788764, Length=174, Percent_Identity=29.3103448275862, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29428; Mature: 29428

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWQGFTFHWYTDLFQKQDVIDALVN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEECCCCHHHHHHHHHHHHHHHHHHH
SITIALITTFVTTALGVFFAVALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
GMELGQATIIIAHITFSISFVVVILAARLSSMGHDLEEAANDLGATPWQTFRHVTLPSIA
HHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHCCCCCCC
PGIISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GLMIASEIFRNKGADGEENSGGHLPL
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWQGFTFHWYTDLFQKQDVIDALVN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEECCCCHHHHHHHHHHHHHHHHHHH
SITIALITTFVTTALGVFFAVALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
GMELGQATIIIAHITFSISFVVVILAARLSSMGHDLEEAANDLGATPWQTFRHVTLPSIA
HHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHCCCCCCC
PGIISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GLMIASEIFRNKGADGEENSGGHLPL
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]