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The map label for this gene is yjbM [H]

Identifier: 152974726

GI number: 152974726

Start: 1033016

End: 1033654

Strand: Direct

Name: yjbM [H]

Synonym: Bcer98_0914

Alternate gene names: 152974726

Gene position: 1033016-1033654 (Clockwise)

Preceding gene: 152974725

Following gene: 152974727

Centisome position: 25.28

GC content: 40.22

Gene sequence:

>639_bases
ATGAATCGTAATTGGGAAGAATTTTTGGCTCCTTACCATCAAGCGGTGGCGGAGCTAAAAGTAAAGTTAAAAGGAATGCG
AACCCAGTTTACTATGCTAACGGAGCATTCCCCAATTGAATTTGTAACAGGAAGGGTAAAATCGGTAGCAAGTATTATTG
ATAAAGCAGAAAAACGAGGAATTCCGTTAAATCGACTGAGAGAAGAGATGCAGGATATTGCGGGACTGCGCATGATGTGT
CAATTTGTTGATGAAATCAAACCAGTTGTGGAATATCTCCGCAAACGCAATGACTTTGAAATTGTGGAAGAGCGAGATTA
TGTCACGCAGAAGAAAGAGAGCGGTTATCGCTCTTATCATGTTGTCATTAGTTACCCTGTTCAAACCATTTGCGGAGAGA
AGAAAGTGCTGGTTGAAATTCAAATTCGCACGTTAGCCATGAATTTCTGGGCAACCATTGAGCATTCTTTAAATTACAAA
TATAGCGGGCGTTTCCCAGAAGATATAAAGGTACGTTTGCAACGTGCAGCCGAAGCTGCGTTTTTGTTAGACGAGGAAAT
GTCTTCGATTCGCTTTGAAATTCAAGAAGCGCAAAAGATTTTTTCAAGGAAACAAGAAGCGAAAGAATCTGAATCATAA

Upstream 100 bases:

>100_bases
TCGTAATATTGAAGGTAATGCAAATTATGGTGAAGAACTTGTGTCAGCGGTAGAGAAAGTATTTCTATAAGGAAATGGAT
TGACTTTGGTGGTGGTTGAA

Downstream 100 bases:

>100_bases
ATTAAAGGGTGTTGGGCAATGAAATTTACAATTATGTCAAAGGGAGATCAATCATCAAATGCACTTGCGAGTACGATGAA
AGAGTATTTGCTTGATTTTG

Product: RelA/SpoT domain-containing protein

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFTMLTEHSPIEFVTGRVKSVASIIDKAEKRGIPLNRLREEMQDIAGLRMMC
QFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKESGYRSYHVVISYPVQTICGEKKVLVEIQIRTLAMNFWATIEHSLNYK
YSGRFPEDIKVRLQRAAEAAFLLDEEMSSIRFEIQEAQKIFSRKQEAKESES

Sequences:

>Translated_212_residues
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFTMLTEHSPIEFVTGRVKSVASIIDKAEKRGIPLNRLREEMQDIAGLRMMC
QFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKESGYRSYHVVISYPVQTICGEKKVLVEIQIRTLAMNFWATIEHSLNYK
YSGRFPEDIKVRLQRAAEAAFLLDEEMSSIRFEIQEAQKIFSRKQEAKESES
>Mature_212_residues
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFTMLTEHSPIEFVTGRVKSVASIIDKAEKRGIPLNRLREEMQDIAGLRMMC
QFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKESGYRSYHVVISYPVQTICGEKKVLVEIQIRTLAMNFWATIEHSLNYK
YSGRFPEDIKVRLQRAAEAAFLLDEEMSSIRFEIQEAQKIFSRKQEAKESES

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 24962; Mature: 24962

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFTMLTEHSPIEFVTGRVKSVASIIDKAEKRG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
IPLNRLREEMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKESGYRSYH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEE
VVISYPVQTICGEKKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKVRLQRAAEAA
EEEECCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHH
FLLDEEMSSIRFEIQEAQKIFSRKQEAKESES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFTMLTEHSPIEFVTGRVKSVASIIDKAEKRG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
IPLNRLREEMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKESGYRSYH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEE
VVISYPVQTICGEKKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKVRLQRAAEAA
EEEECCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHH
FLLDEEMSSIRFEIQEAQKIFSRKQEAKESES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]