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The map label for this gene is yhcR [H]

Identifier: 152974643

GI number: 152974643

Start: 943448

End: 945820

Strand: Direct

Name: yhcR [H]

Synonym: Bcer98_0829

Alternate gene names: 152974643

Gene position: 943448-945820 (Clockwise)

Preceding gene: 152974642

Following gene: 152974645

Centisome position: 23.08

GC content: 40.62

Gene sequence:

>2373_bases
ATGGCGGTGAAGAAAGTAATCGGTATCGTTTTATCATTTATACTGTTTATTTCATTTACAGGAACGATAGTGAAAGCGGA
AGAAACGAATTCGTTATCAGTGCTTGATGCGATTCAACAGTTTCAGCAGCATGGTAAAAGTAAAGGGGTAGTAGAAGGAT
ATATTGTTGGATATACACAAAGTCCGTCAAAGTATACGAGAGATCCAGCGAAGTTTGGAGATACAAATGTAGCAATTGCA
GATTCTCCAGATGAGACCAATCCGGAGAAGGGTATGCCTGTTCAGTTGCCAAAAGGGGACGTAAGAGCAGCAGTGAATGT
GAAAGATCATCCTGAAAATGTTGGGAAGAAAGTTCAATTGACAGGTACATTAGAGTTATATTTTAGTAGTCCTGGTTTAA
AAGCAGTAACAGCGTACAAGTTTCCAGGAGAATTAGAAAATCGTGTAAGCAAAGTCACTGCGTCACCGAATGGGAGAGAA
GTGGAAAAGGGAACGCTTGTTACATTAACGACGAGGACAGAAGGGGCGACGATCTATTATACGCTAGATGGATCAGAGCC
TACGAATCAAAGTATTCGTTATTATGAACCGATTGTTTTACAAGAAGATACGGTGATTCAGGCAATTGGGGTAAAGGAAG
GGAGTGAGTCTTCACCAGTTGCTACGTTTTCGTTTACAGTGGTAAAAGGTGAGAAAGTACACATTCATGATATTCAAGGG
AAAGCGCATATTTCTCCTTGTAAAGGGAAAAAAGTGCGCAATGTAGAAGGGATAGTCACTGCGTTAGATAAATACGGTTT
TTATATGCAAGATGCACAGCCTGATGACGACCCAGCTACTTCAGAAGGAATTTACGTGTATCAGAAAGATGCTGATGTGA
AAGTGGGAGACGTTGTCCAAGTAGATGGACAAGTGGAGGAGCATGTTGGAGCTGGATATGCGGAACGATTTGAAACAGAT
TTAACTACGACAGAAATTAAGGCAACTCGCGCAACCATAAAGGCGAGTCATGTGCCACTTCCAGAAGCAGTTGTGCTAGG
GGAGCATGGCGTGAAGATTCCAGATGAAATCATTGATAATGATGCATTCGGTGTTTTTGATCCGCAGGAAGATGCGATTG
ATTTTTATGAAAGCTTAGAAGGTATGCGAGTTACACTTCCAACACCAAAAGTGGTTGCACCGCAGAAGCATGGGAATTTA
TATGTAACGATTGCAAATGGTAGCAATAAAGTGGTAACGAAATATGGAACGCCGCTTTTAAGTGAGACGCAACTCAATCC
AGAACGCTTATCTTTAAAAGTACCTCGTAACCATGTAGCAAAAGTTGGTGATACTTTTAACGGTGATATAACAGGAGTAG
TAGGTTATGATTATAGCGCATACCGCATTTCGCCAGTGACGGAATTACCATCTGTGATAGACGGAGGGTTTAAACAAGTG
GGAGCAAAGATTCAGCCTCGGCTTGGGAGAGTAACAGTCGCTACATATAACATGGAAAACTTTTCTGCAAATCAAAAGGA
AACATCTGATGAAAAAGTAAAAGCGCTCGCGTATTCGATTAAATATAATTTAAAAATGCCGGATATTATTGGTGTGCAAG
AGATGCAAGATAATAATGGAACAATAAATGATGGCACAACAGATGCTTCATTAAGTGCAAAACGTATAATTGATGCGGTG
CAAGCAATCCATGGTCCAAAGTATGAATATGTAGAAGTAGCGCCTCTAAACAATCAAGATGGAGGAGCGCCGGGAGCGAA
TATTCGCGTCGGTTTTTTCTATAATTCATCGCGCGTAAAACTAGCGGATCAACCAAAATTGTTAGAGACAAATCCGACAC
GCATTGGGCAGGACAATCCGTTATTTGAAAGCACCCGTAAACCATTAGCCGCTGAATTTACATTCCAAGGTCAACATCTA
GTTGTTATTTCTAATCATTTAAACTCAAAAATAGGTGATGCACCGCCATTTGGAAGCATACAACCACTGGTATGGAAAAG
CGAAGAAAAACGAGTACAGCTGGCCCAAGAAGTGAATCGTTTTGTGAAAGGAATTCAAAAACGAGATGCGAACGCACCTG
TTGTTGTAGTAGGGGATATGAACGATTTTGAATTCTCTAAACCACTGCAAGCGCTAAAAGGCGACACATTACAAAATATG
TTAGAAACTGTTTCAAAAGAAAATCGGTACACATATATTCATGAAGGGAATGCACAAGTACTAGATCACATCTTAGTGAC
AAATAATATTGCAAATCATACAATTGTAGATCCAGTACACTTAAATACAAATATGATGAAGGAGCACGGCCGCGTCAGCG
ATCATGACCCGGTGCTTGCGCAAATTGATTTGAAAAAAGCCCGTTCAGTTTAG

Upstream 100 bases:

>100_bases
AGTTAATTTTTTGTAAAGTTTGTCGTATGATCGTTCTTTATAAAGAATGATTTGTTATGATAATACATGCCGTTAGGACA
AAAGAAGTAAGGAGAGGAAG

Downstream 100 bases:

>100_bases
ACGGGTTTTTTTACGTAGTGCGGTGACGAAATTTGTCGACTGGTCGATATCTTGTGTCGAAACGCCGATGAAATTGATTT
TGCGCCGATATATTTCATTT

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 790; Mature: 789

Protein sequence:

>790_residues
MAVKKVIGIVLSFILFISFTGTIVKAEETNSLSVLDAIQQFQQHGKSKGVVEGYIVGYTQSPSKYTRDPAKFGDTNVAIA
DSPDETNPEKGMPVQLPKGDVRAAVNVKDHPENVGKKVQLTGTLELYFSSPGLKAVTAYKFPGELENRVSKVTASPNGRE
VEKGTLVTLTTRTEGATIYYTLDGSEPTNQSIRYYEPIVLQEDTVIQAIGVKEGSESSPVATFSFTVVKGEKVHIHDIQG
KAHISPCKGKKVRNVEGIVTALDKYGFYMQDAQPDDDPATSEGIYVYQKDADVKVGDVVQVDGQVEEHVGAGYAERFETD
LTTTEIKATRATIKASHVPLPEAVVLGEHGVKIPDEIIDNDAFGVFDPQEDAIDFYESLEGMRVTLPTPKVVAPQKHGNL
YVTIANGSNKVVTKYGTPLLSETQLNPERLSLKVPRNHVAKVGDTFNGDITGVVGYDYSAYRISPVTELPSVIDGGFKQV
GAKIQPRLGRVTVATYNMENFSANQKETSDEKVKALAYSIKYNLKMPDIIGVQEMQDNNGTINDGTTDASLSAKRIIDAV
QAIHGPKYEYVEVAPLNNQDGGAPGANIRVGFFYNSSRVKLADQPKLLETNPTRIGQDNPLFESTRKPLAAEFTFQGQHL
VVISNHLNSKIGDAPPFGSIQPLVWKSEEKRVQLAQEVNRFVKGIQKRDANAPVVVVGDMNDFEFSKPLQALKGDTLQNM
LETVSKENRYTYIHEGNAQVLDHILVTNNIANHTIVDPVHLNTNMMKEHGRVSDHDPVLAQIDLKKARSV

Sequences:

>Translated_790_residues
MAVKKVIGIVLSFILFISFTGTIVKAEETNSLSVLDAIQQFQQHGKSKGVVEGYIVGYTQSPSKYTRDPAKFGDTNVAIA
DSPDETNPEKGMPVQLPKGDVRAAVNVKDHPENVGKKVQLTGTLELYFSSPGLKAVTAYKFPGELENRVSKVTASPNGRE
VEKGTLVTLTTRTEGATIYYTLDGSEPTNQSIRYYEPIVLQEDTVIQAIGVKEGSESSPVATFSFTVVKGEKVHIHDIQG
KAHISPCKGKKVRNVEGIVTALDKYGFYMQDAQPDDDPATSEGIYVYQKDADVKVGDVVQVDGQVEEHVGAGYAERFETD
LTTTEIKATRATIKASHVPLPEAVVLGEHGVKIPDEIIDNDAFGVFDPQEDAIDFYESLEGMRVTLPTPKVVAPQKHGNL
YVTIANGSNKVVTKYGTPLLSETQLNPERLSLKVPRNHVAKVGDTFNGDITGVVGYDYSAYRISPVTELPSVIDGGFKQV
GAKIQPRLGRVTVATYNMENFSANQKETSDEKVKALAYSIKYNLKMPDIIGVQEMQDNNGTINDGTTDASLSAKRIIDAV
QAIHGPKYEYVEVAPLNNQDGGAPGANIRVGFFYNSSRVKLADQPKLLETNPTRIGQDNPLFESTRKPLAAEFTFQGQHL
VVISNHLNSKIGDAPPFGSIQPLVWKSEEKRVQLAQEVNRFVKGIQKRDANAPVVVVGDMNDFEFSKPLQALKGDTLQNM
LETVSKENRYTYIHEGNAQVLDHILVTNNIANHTIVDPVHLNTNMMKEHGRVSDHDPVLAQIDLKKARSV
>Mature_789_residues
AVKKVIGIVLSFILFISFTGTIVKAEETNSLSVLDAIQQFQQHGKSKGVVEGYIVGYTQSPSKYTRDPAKFGDTNVAIAD
SPDETNPEKGMPVQLPKGDVRAAVNVKDHPENVGKKVQLTGTLELYFSSPGLKAVTAYKFPGELENRVSKVTASPNGREV
EKGTLVTLTTRTEGATIYYTLDGSEPTNQSIRYYEPIVLQEDTVIQAIGVKEGSESSPVATFSFTVVKGEKVHIHDIQGK
AHISPCKGKKVRNVEGIVTALDKYGFYMQDAQPDDDPATSEGIYVYQKDADVKVGDVVQVDGQVEEHVGAGYAERFETDL
TTTEIKATRATIKASHVPLPEAVVLGEHGVKIPDEIIDNDAFGVFDPQEDAIDFYESLEGMRVTLPTPKVVAPQKHGNLY
VTIANGSNKVVTKYGTPLLSETQLNPERLSLKVPRNHVAKVGDTFNGDITGVVGYDYSAYRISPVTELPSVIDGGFKQVG
AKIQPRLGRVTVATYNMENFSANQKETSDEKVKALAYSIKYNLKMPDIIGVQEMQDNNGTINDGTTDASLSAKRIIDAVQ
AIHGPKYEYVEVAPLNNQDGGAPGANIRVGFFYNSSRVKLADQPKLLETNPTRIGQDNPLFESTRKPLAAEFTFQGQHLV
VISNHLNSKIGDAPPFGSIQPLVWKSEEKRVQLAQEVNRFVKGIQKRDANAPVVVVGDMNDFEFSKPLQALKGDTLQNML
ETVSKENRYTYIHEGNAQVLDHILVTNNIANHTIVDPVHLNTNMMKEHGRVSDHDPVLAQIDLKKARSV

Specific function: Sugar-nonspecific endonuclease that yields nucleotide 3'-monophosphate products. No 5'-nucleotidase activity was detected, using 5'-AMP as the substrate, in the presence of diverse divalent metals and with various pH values [H]

COG id: COG2374

COG function: function code R; Predicted extracellular nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TNase-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008334
- InterPro:   IPR006146
- InterPro:   IPR006179
- InterPro:   IPR019948
- InterPro:   IPR019931
- InterPro:   IPR004843
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR016071
- InterPro:   IPR006021 [H]

Pfam domain/function: PF02872 5_nucleotid_C; PF00746 Gram_pos_anchor; PF00149 Metallophos; PF00565 SNase; PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 86492; Mature: 86360

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKKVIGIVLSFILFISFTGTIVKAEETNSLSVLDAIQQFQQHGKSKGVVEGYIVGYTQ
CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEC
SPSKYTRDPAKFGDTNVAIADSPDETNPEKGMPVQLPKGDVRAAVNVKDHPENVGKKVQL
CCHHHCCCCHHCCCCEEEEECCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCEEEE
TGTLELYFSSPGLKAVTAYKFPGELENRVSKVTASPNGREVEKGTLVTLTTRTEGATIYY
EEEEEEEECCCCCEEEEEEECCCHHHHHHHEEECCCCCCEECCCEEEEEEEECCCEEEEE
TLDGSEPTNQSIRYYEPIVLQEDTVIQAIGVKEGSESSPVATFSFTVVKGEKVHIHDIQG
EECCCCCCCCCCEEECCEEECCCCEEEEECCCCCCCCCCEEEEEEEEEECCEEEEEECCC
KAHISPCKGKKVRNVEGIVTALDKYGFYMQDAQPDDDPATSEGIYVYQKDADVKVGDVVQ
CEEECCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCCCEECCEEE
VDGQVEEHVGAGYAERFETDLTTTEIKATRATIKASHVPLPEAVVLGEHGVKIPDEIIDN
ECCCHHHHHCCCHHHHHHCCCCCEEEEEEHEEEEECCCCCCCEEEECCCCCCCCHHHHCC
DAFGVFDPQEDAIDFYESLEGMRVTLPTPKVVAPQKHGNLYVTIANGSNKVVTKYGTPLL
CCCCCCCCCHHHHHHHHHCCCCEEECCCCCEECCCCCCCEEEEEECCCCEEEEECCCCCC
SETQLNPERLSLKVPRNHVAKVGDTFNGDITGVVGYDYSAYRISPVTELPSVIDGGFKQV
CCCCCCHHHEEEECCHHHHHHCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHCCCHHHH
GAKIQPRLGRVTVATYNMENFSANQKETSDEKVKALAYSIKYNLKMPDIIGVQEMQDNNG
CCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCHHHCCCCCC
TINDGTTDASLSAKRIIDAVQAIHGPKYEYVEVAPLNNQDGGAPGANIRVGFFYNSSRVK
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEEE
LADQPKLLETNPTRIGQDNPLFESTRKPLAAEFTFQGQHLVVISNHLNSKIGDAPPFGSI
ECCCCCEECCCCCCCCCCCCCHHHHCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
QPLVWKSEEKRVQLAQEVNRFVKGIQKRDANAPVVVVGDMNDFEFSKPLQALKGDTLQNM
CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCHHHHHH
LETVSKENRYTYIHEGNAQVLDHILVTNNIANHTIVDPVHLNTNMMKEHGRVSDHDPVLA
HHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEECEEECCHHHHHHCCCCCCCCCEEE
QIDLKKARSV
EEEHHHHCCC
>Mature Secondary Structure 
AVKKVIGIVLSFILFISFTGTIVKAEETNSLSVLDAIQQFQQHGKSKGVVEGYIVGYTQ
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEC
SPSKYTRDPAKFGDTNVAIADSPDETNPEKGMPVQLPKGDVRAAVNVKDHPENVGKKVQL
CCHHHCCCCHHCCCCEEEEECCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCEEEE
TGTLELYFSSPGLKAVTAYKFPGELENRVSKVTASPNGREVEKGTLVTLTTRTEGATIYY
EEEEEEEECCCCCEEEEEEECCCHHHHHHHEEECCCCCCEECCCEEEEEEEECCCEEEEE
TLDGSEPTNQSIRYYEPIVLQEDTVIQAIGVKEGSESSPVATFSFTVVKGEKVHIHDIQG
EECCCCCCCCCCEEECCEEECCCCEEEEECCCCCCCCCCEEEEEEEEEECCEEEEEECCC
KAHISPCKGKKVRNVEGIVTALDKYGFYMQDAQPDDDPATSEGIYVYQKDADVKVGDVVQ
CEEECCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCCCEECCEEE
VDGQVEEHVGAGYAERFETDLTTTEIKATRATIKASHVPLPEAVVLGEHGVKIPDEIIDN
ECCCHHHHHCCCHHHHHHCCCCCEEEEEEHEEEEECCCCCCCEEEECCCCCCCCHHHHCC
DAFGVFDPQEDAIDFYESLEGMRVTLPTPKVVAPQKHGNLYVTIANGSNKVVTKYGTPLL
CCCCCCCCCHHHHHHHHHCCCCEEECCCCCEECCCCCCCEEEEEECCCCEEEEECCCCCC
SETQLNPERLSLKVPRNHVAKVGDTFNGDITGVVGYDYSAYRISPVTELPSVIDGGFKQV
CCCCCCHHHEEEECCHHHHHHCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHCCCHHHH
GAKIQPRLGRVTVATYNMENFSANQKETSDEKVKALAYSIKYNLKMPDIIGVQEMQDNNG
CCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCHHHCCCCCC
TINDGTTDASLSAKRIIDAVQAIHGPKYEYVEVAPLNNQDGGAPGANIRVGFFYNSSRVK
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEEE
LADQPKLLETNPTRIGQDNPLFESTRKPLAAEFTFQGQHLVVISNHLNSKIGDAPPFGSI
ECCCCCEECCCCCCCCCCCCCHHHHCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
QPLVWKSEEKRVQLAQEVNRFVKGIQKRDANAPVVVVGDMNDFEFSKPLQALKGDTLQNM
CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCHHHHHH
LETVSKENRYTYIHEGNAQVLDHILVTNNIANHTIVDPVHLNTNMMKEHGRVSDHDPVLA
HHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEECEEECCHHHHHHCCCCCCCCCEEE
QIDLKKARSV
EEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]