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The map label for this gene is yhaM

Identifier: 152974612

GI number: 152974612

Start: 909442

End: 910398

Strand: Direct

Name: yhaM

Synonym: Bcer98_0796

Alternate gene names: 152974612

Gene position: 909442-910398 (Clockwise)

Preceding gene: 152974611

Following gene: 152974614

Centisome position: 22.25

GC content: 37.83

Gene sequence:

>957_bases
ATGAAAAAGAAAATTGCAGAATATGAAGTTGGTGAACAAGTCGATCTTTTCTTGCTTATTAAGACAGCAACAAAAGGAAT
CGCAAGTAACGGGAAGCCGTTTTTAACAGTAATCTTGCAAGACCAAAGCGGAGATATTGAAGCAAAGCTATGGGATGTAT
CACCGGAAGTGGAGAGACAATATACAGCGGAAACAATTGTAAAAGTAGCTGGTGATATTCAAAATTATAAAGGACGTATC
CAGCTTCGTGTTAAGCAAATCCGTGTTGCAAATCCGAATGAAGTAACAGATATCTCAGACTTTGTTGAAAAAGCACCAGT
GAAAAAAGAAGATATGGTGGAAAAAATTACGCAGTACATATTTGAAATGAGAAATCCGAACATTCAGCGTCTAACAAGAC
ATTTATTAAATAAGCATCAAAATGATTTCTTAGATTATCCAGCAGCGACGAAAAATCATCATGAGTTCGTATCAGGACTT
GCTTACCATGTTGTATCTATGCTGGATTTGGCGAAAGCAATTTCGACGCTGTATCCATCTTTAGATAAAGATTTACTCTA
TGCAGGTGTCATCTTGCATGACCTTGGTAAAGTTATCGAGTTATCAGGTCCAATTTCGACAACATATACATTAGAAGGAA
ACTTACTCGGTCATATTTCAATTATGGTGAACGAAATTGGAAAAGCAGCAGAAGAGTTGAAAATTGAGGGAGAAGAAGTA
TTAATCCTTCAGCACATCGTCTTATCTCATCATGGAAAAGCAGAGTGGGGAAGCCCCAAACCACCATTAGTAAAAGAAGC
GGAAATTTTACACTACATCGATAATTTAGATGCAAAAATGAACATGATGGACCGCGCTCTTGGACGCACAAAACCAGGCG
AATACACAGAACGCGTCTTTGCGCTTGATAACCGTTCGTTCTATAAACCGAAGTTCCAAACGTATTATGACAAGTAA

Upstream 100 bases:

>100_bases
TCTTTACGGAAAAACAGATGATAAAATTAACGCCAGAGCGTAAAGAAAATAGAGTGTAGTGTGCTATACTAAAAGTACTT
AAGTTGGTGGAGGAATCAGG

Downstream 100 bases:

>100_bases
TGTTAGTTAATAATTACATTTACTTGCCCACGTGATTTTAAAAAGGGATTATATTGGTTTACGGCAGTTTTCTCTATAGA
TTTAGTTAGATGTAAATAAA

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKKKIAEYEVGEQVDLFLLIKTATKGIASNGKPFLTVILQDQSGDIEAKLWDVSPEVERQYTAETIVKVAGDIQNYKGRI
QLRVKQIRVANPNEVTDISDFVEKAPVKKEDMVEKITQYIFEMRNPNIQRLTRHLLNKHQNDFLDYPAATKNHHEFVSGL
AYHVVSMLDLAKAISTLYPSLDKDLLYAGVILHDLGKVIELSGPISTTYTLEGNLLGHISIMVNEIGKAAEELKIEGEEV
LILQHIVLSHHGKAEWGSPKPPLVKEAEILHYIDNLDAKMNMMDRALGRTKPGEYTERVFALDNRSFYKPKFQTYYDK

Sequences:

>Translated_318_residues
MKKKIAEYEVGEQVDLFLLIKTATKGIASNGKPFLTVILQDQSGDIEAKLWDVSPEVERQYTAETIVKVAGDIQNYKGRI
QLRVKQIRVANPNEVTDISDFVEKAPVKKEDMVEKITQYIFEMRNPNIQRLTRHLLNKHQNDFLDYPAATKNHHEFVSGL
AYHVVSMLDLAKAISTLYPSLDKDLLYAGVILHDLGKVIELSGPISTTYTLEGNLLGHISIMVNEIGKAAEELKIEGEEV
LILQHIVLSHHGKAEWGSPKPPLVKEAEILHYIDNLDAKMNMMDRALGRTKPGEYTERVFALDNRSFYKPKFQTYYDK
>Mature_318_residues
MKKKIAEYEVGEQVDLFLLIKTATKGIASNGKPFLTVILQDQSGDIEAKLWDVSPEVERQYTAETIVKVAGDIQNYKGRI
QLRVKQIRVANPNEVTDISDFVEKAPVKKEDMVEKITQYIFEMRNPNIQRLTRHLLNKHQNDFLDYPAATKNHHEFVSGL
AYHVVSMLDLAKAISTLYPSLDKDLLYAGVILHDLGKVIELSGPISTTYTLEGNLLGHISIMVNEIGKAAEELKIEGEEV
LILQHIVLSHHGKAEWGSPKPPLVKEAEILHYIDNLDAKMNMMDRALGRTKPGEYTERVFALDNRSFYKPKFQTYYDK

Specific function: Shows a 3'-5' exoribonuclease activity

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHAM_BACCN (A7GLX6)

Other databases:

- EMBL:   CP000764
- RefSeq:   YP_001374129.1
- ProteinModelPortal:   A7GLX6
- STRING:   A7GLX6
- EnsemblBacteria:   EBBACT00000036179
- GeneID:   5346289
- GenomeReviews:   CP000764_GR
- KEGG:   bcy:Bcer98_0796
- eggNOG:   COG3481
- GeneTree:   EBGT00050000001853
- HOGENOM:   HBG712169
- OMA:   IAFTFQD
- ProtClustDB:   PRK13480
- BioCyc:   BCER315749:BCER98_0796-MONOMER
- HAMAP:   MF_01427
- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00471

Pfam domain/function: PF01336 tRNA_anti

EC number: NA

Molecular weight: Translated: 36134; Mature: 36134

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKIAEYEVGEQVDLFLLIKTATKGIASNGKPFLTVILQDQSGDIEAKLWDVSPEVERQ
CCCCCCCCCCCCCCEEEEEEEHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHH
YTAETIVKVAGDIQNYKGRIQLRVKQIRVANPNEVTDISDFVEKAPVKKEDMVEKITQYI
HHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
FEMRNPNIQRLTRHLLNKHQNDFLDYPAATKNHHEFVSGLAYHVVSMLDLAKAISTLYPS
HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LDKDLLYAGVILHDLGKVIELSGPISTTYTLEGNLLGHISIMVNEIGKAAEELKIEGEEV
CCHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCCHH
LILQHIVLSHHGKAEWGSPKPPLVKEAEILHYIDNLDAKMNMMDRALGRTKPGEYTERVF
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHEE
ALDNRSFYKPKFQTYYDK
EECCCCCCCCCHHHCCCC
>Mature Secondary Structure
MKKKIAEYEVGEQVDLFLLIKTATKGIASNGKPFLTVILQDQSGDIEAKLWDVSPEVERQ
CCCCCCCCCCCCCCEEEEEEEHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHH
YTAETIVKVAGDIQNYKGRIQLRVKQIRVANPNEVTDISDFVEKAPVKKEDMVEKITQYI
HHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
FEMRNPNIQRLTRHLLNKHQNDFLDYPAATKNHHEFVSGLAYHVVSMLDLAKAISTLYPS
HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LDKDLLYAGVILHDLGKVIELSGPISTTYTLEGNLLGHISIMVNEIGKAAEELKIEGEEV
CCHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCCHH
LILQHIVLSHHGKAEWGSPKPPLVKEAEILHYIDNLDAKMNMMDRALGRTKPGEYTERVF
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHEE
ALDNRSFYKPKFQTYYDK
EECCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA