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The map label for this gene is ygeV [H]

Identifier: 152974580

GI number: 152974580

Start: 873306

End: 874679

Strand: Direct

Name: ygeV [H]

Synonym: Bcer98_0762

Alternate gene names: 152974580

Gene position: 873306-874679 (Clockwise)

Preceding gene: 152974579

Following gene: 152974581

Centisome position: 21.37

GC content: 36.97

Gene sequence:

>1374_bases
ATGATGCAAAAGGAGAGAGGGACCGATTACACAGTAGAGGTGACGGCTGATGTTTTGATGAATATATTAGATCATTCATC
GGATGAGATTTATGTTTTAGATAAGGATACGCGTATTGTTTATGTGAATAAAGTTTGCGAAAGACATTATGGGTTAAAGC
CGAGTGAAGTAATCGGACGGCTGAATGAGGAATTTGTGTTGAATAACTATTGGAAGCCGTCCATTGTTCCGATTGTTTTT
AAAGAAAAGAAGCCTGTAACGATTAAGCAAACGACTTATATTGGTGGGGAGTTAATTACAACAGCTATACCTATTTTGAA
TAAGGAAAATGAAATTGAGCTTGTTGTGACGACAGCTCGTGAGCAAAATTATAAAACAATTATCATGGCCCCAGTAGAGC
AAGAAATGGAGCATTCACATGATGACAATTTATTTGGACAAACGATCCTTACAAATAATGAAAAAATGAAAAACTTAATC
AAATTTTGTGAGAAGGTTGCTTCTACGGATACGACGGTGTTGATTCAAGGGGAGTCAGGAACGGGAAAGGGGGTATTGGC
GAATTATATTCATCAAATGAGCAAGCGGAGAAAAGGACCGTTTTTAACTGTCAATTGTGCGGCTATCCCGGAAGAACTTT
TGGAGTCCGAGCTATTTGGATATTCTAAAGGGGCATTTACAGGAGCAAAAAGAAGCGGACAAGTGGGACTTTTTGAAACG
GCTAATCATGGGACAATTTTTTTAGATGAAATTGGCGAAATTTCTCTGAAAGTTCAAGCAAAGATTTTACAAGTGATTCA
AGAGCGACAATTTATTCCTGTCGGAGGAAGAAATCTTAAAAAAGTAGATGTTCGTATTATTGCTGCGACGAATCAAAATT
TGTATGAAATGGTGCAACAGAAACAGTTTAGAGAGGATTTATACTACCGGCTTAATGTTATTGATATAAAGTTACCACCA
TTAAGGGAACGAATGGAAGATGCGATTTCTTTAACATATTATTTTTTAAATAAATTTAATAAAAAATATCAAGTGAATCG
CATTGTTTCGCAAGATGTGCTCGATATGATTAGTAGATATTTGTGGCCTGGAAATGTGCGACAGCTTGAAAATGTAATCG
AACGATTAGTGGTGACAAGCGACTCTGTTATTCAATCATCTGATTTACCGGAAATGATTCTTCAGGCTGCTGAGACGAAA
CAGTTTTATTCGCGCCCAACTGCATTAGATGCGGCAATAAGGGAATTGGAAGAGCAAATGGTAGTCAACTCGTATAAGAA
GTTTGGAAGTACAAGGAAGGTAGCTGCTGATTTATCAATCAGTCAGACGAGAGCTTCTAAATTAATACGTAAATATTGTA
AAGATGCGATGTAG

Upstream 100 bases:

>100_bases
CTTTGTAAGTCATTCAAATTGAGTTATAATCAACTTGTTTAATATTTTAATTAATCTAAATTTTCTAAAACATTTTTATT
AAACAGGGGGAAGGTGATGA

Downstream 100 bases:

>100_bases
GTGCTAAAGAGGCAATGCTTTCAAGCATTGCCTCTTTTCGTTTTACTAGTAAAGTGAATCGAAAATAACTCGTGTGAGTT
TCATTCACTTCGTTTTTTAT

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MMQKERGTDYTVEVTADVLMNILDHSSDEIYVLDKDTRIVYVNKVCERHYGLKPSEVIGRLNEEFVLNNYWKPSIVPIVF
KEKKPVTIKQTTYIGGELITTAIPILNKENEIELVVTTAREQNYKTIIMAPVEQEMEHSHDDNLFGQTILTNNEKMKNLI
KFCEKVASTDTTVLIQGESGTGKGVLANYIHQMSKRRKGPFLTVNCAAIPEELLESELFGYSKGAFTGAKRSGQVGLFET
ANHGTIFLDEIGEISLKVQAKILQVIQERQFIPVGGRNLKKVDVRIIAATNQNLYEMVQQKQFREDLYYRLNVIDIKLPP
LRERMEDAISLTYYFLNKFNKKYQVNRIVSQDVLDMISRYLWPGNVRQLENVIERLVVTSDSVIQSSDLPEMILQAAETK
QFYSRPTALDAAIRELEEQMVVNSYKKFGSTRKVAADLSISQTRASKLIRKYCKDAM

Sequences:

>Translated_457_residues
MMQKERGTDYTVEVTADVLMNILDHSSDEIYVLDKDTRIVYVNKVCERHYGLKPSEVIGRLNEEFVLNNYWKPSIVPIVF
KEKKPVTIKQTTYIGGELITTAIPILNKENEIELVVTTAREQNYKTIIMAPVEQEMEHSHDDNLFGQTILTNNEKMKNLI
KFCEKVASTDTTVLIQGESGTGKGVLANYIHQMSKRRKGPFLTVNCAAIPEELLESELFGYSKGAFTGAKRSGQVGLFET
ANHGTIFLDEIGEISLKVQAKILQVIQERQFIPVGGRNLKKVDVRIIAATNQNLYEMVQQKQFREDLYYRLNVIDIKLPP
LRERMEDAISLTYYFLNKFNKKYQVNRIVSQDVLDMISRYLWPGNVRQLENVIERLVVTSDSVIQSSDLPEMILQAAETK
QFYSRPTALDAAIRELEEQMVVNSYKKFGSTRKVAADLSISQTRASKLIRKYCKDAM
>Mature_457_residues
MMQKERGTDYTVEVTADVLMNILDHSSDEIYVLDKDTRIVYVNKVCERHYGLKPSEVIGRLNEEFVLNNYWKPSIVPIVF
KEKKPVTIKQTTYIGGELITTAIPILNKENEIELVVTTAREQNYKTIIMAPVEQEMEHSHDDNLFGQTILTNNEKMKNLI
KFCEKVASTDTTVLIQGESGTGKGVLANYIHQMSKRRKGPFLTVNCAAIPEELLESELFGYSKGAFTGAKRSGQVGLFET
ANHGTIFLDEIGEISLKVQAKILQVIQERQFIPVGGRNLKKVDVRIIAATNQNLYEMVQQKQFREDLYYRLNVIDIKLPP
LRERMEDAISLTYYFLNKFNKKYQVNRIVSQDVLDMISRYLWPGNVRQLENVIERLVVTSDSVIQSSDLPEMILQAAETK
QFYSRPTALDAAIRELEEQMVVNSYKKFGSTRKVAADLSISQTRASKLIRKYCKDAM

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=458, Percent_Identity=35.8078602620087, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI1788550, Length=301, Percent_Identity=48.5049833887043, Blast_Score=265, Evalue=3e-72,
Organism=Escherichia coli, GI87082117, Length=239, Percent_Identity=49.7907949790795, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1789087, Length=289, Percent_Identity=44.9826989619377, Blast_Score=228, Evalue=7e-61,
Organism=Escherichia coli, GI1790299, Length=263, Percent_Identity=46.3878326996198, Blast_Score=225, Evalue=6e-60,
Organism=Escherichia coli, GI1788905, Length=259, Percent_Identity=44.015444015444, Blast_Score=222, Evalue=3e-59,
Organism=Escherichia coli, GI1790437, Length=364, Percent_Identity=37.0879120879121, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI1787583, Length=318, Percent_Identity=38.6792452830189, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI87082152, Length=242, Percent_Identity=47.5206611570248, Blast_Score=211, Evalue=9e-56,
Organism=Escherichia coli, GI1786524, Length=312, Percent_Identity=39.7435897435897, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI87081872, Length=328, Percent_Identity=35.3658536585366, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI87081858, Length=452, Percent_Identity=26.1061946902655, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1789828, Length=282, Percent_Identity=34.0425531914894, Blast_Score=143, Evalue=3e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 52277; Mature: 52277

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQKERGTDYTVEVTADVLMNILDHSSDEIYVLDKDTRIVYVNKVCERHYGLKPSEVIGR
CCCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEEECCCEEEEHHHHHHHHCCCCHHHHHHC
LNEEFVLNNYWKPSIVPIVFKEKKPVTIKQTTYIGGELITTAIPILNKENEIELVVTTAR
CCCHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEEEEECC
EQNYKTIIMAPVEQEMEHSHDDNLFGQTILTNNEKMKNLIKFCEKVASTDTTVLIQGESG
CCCCCEEEECCCHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
TGKGVLANYIHQMSKRRKGPFLTVNCAAIPEELLESELFGYSKGAFTGAKRSGQVGLFET
CCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
ANHGTIFLDEIGEISLKVQAKILQVIQERQFIPVGGRNLKKVDVRIIAATNQNLYEMVQQ
CCCCEEEEECCCCEEHHHHHHHHHHHHHCCEECCCCCCCEEEEEEEEEECCCHHHHHHHH
KQFREDLYYRLNVIDIKLPPLRERMEDAISLTYYFLNKFNKKYQVNRIVSQDVLDMISRY
HHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LWPGNVRQLENVIERLVVTSDSVIQSSDLPEMILQAAETKQFYSRPTALDAAIRELEEQM
CCCCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VVNSYKKFGSTRKVAADLSISQTRASKLIRKYCKDAM
HHHHHHHHCCCCEEHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMQKERGTDYTVEVTADVLMNILDHSSDEIYVLDKDTRIVYVNKVCERHYGLKPSEVIGR
CCCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEEECCCEEEEHHHHHHHHCCCCHHHHHHC
LNEEFVLNNYWKPSIVPIVFKEKKPVTIKQTTYIGGELITTAIPILNKENEIELVVTTAR
CCCHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEEEEECC
EQNYKTIIMAPVEQEMEHSHDDNLFGQTILTNNEKMKNLIKFCEKVASTDTTVLIQGESG
CCCCCEEEECCCHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
TGKGVLANYIHQMSKRRKGPFLTVNCAAIPEELLESELFGYSKGAFTGAKRSGQVGLFET
CCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
ANHGTIFLDEIGEISLKVQAKILQVIQERQFIPVGGRNLKKVDVRIIAATNQNLYEMVQQ
CCCCEEEEECCCCEEHHHHHHHHHHHHHCCEECCCCCCCEEEEEEEEEECCCHHHHHHHH
KQFREDLYYRLNVIDIKLPPLRERMEDAISLTYYFLNKFNKKYQVNRIVSQDVLDMISRY
HHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LWPGNVRQLENVIERLVVTSDSVIQSSDLPEMILQAAETKQFYSRPTALDAAIRELEEQM
CCCCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VVNSYKKFGSTRKVAADLSISQTRASKLIRKYCKDAM
HHHHHHHHCCCCEEHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]