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The map label for this gene is yabM [H]

Identifier: 152974535

GI number: 152974535

Start: 812004

End: 813524

Strand: Direct

Name: yabM [H]

Synonym: Bcer98_0712

Alternate gene names: 152974535

Gene position: 812004-813524 (Clockwise)

Preceding gene: 152974532

Following gene: 152974536

Centisome position: 19.87

GC content: 37.61

Gene sequence:

>1521_bases
ATGAATAAAAAGTTCGTTAAAGGGGCTGCGATTTTAACGATTACAACGTTTCTATCGAAGCTGTTGGGAAGTTTTTTTCA
AATCCCATTACAAAACATTGCAGGAGATGAGGTATTAGGTATTTTTCGCCTTGTTTTTCCTGTATATATGATAGCTTTAA
CTTTATCGGTTGCCGGGGTTCCAGTAGCGATATCTAAATTAATAGCAGAACTTCATGAAAAGAATGAGCAAGAAAGGATA
GCGAAATTATTTACTTCTGCCTCTATTATAGGCAGTATATTTGGATTAATTGGCTGCGTTGTTATTGTACTTGGATCTAG
CACAATTGCTAATATGCTTGGAGGGCAAGAGACAAGACTGTCACTTATTATCACTTCATTTGCACTTTTGGTTGCGCCGT
ATATGGCAGTATATCGCGGGTATTTTCAAGGGTTTGGAGATATGGCTCCAACTGGCGTGTCACAAGTGATTGAACAGTTT
GTTCGCGTGTTTTTTATGCTGACAATTGCGTATGTATGTGTTGTTTGGAATGAAAGTAGCGATGTCGTAACAGGTGGGGC
GATGATTGGCGCGGTTCTTGGCGTAATGAGCTCACTGCTATACTTGCGTGTCCAGTATAGTAAAAGTCCATATCGTTATA
AGACGAAAACATACACATTTCAAGACTTGAAACGAGATGGAAAGAGAATATTGCACATTTCGATTCCGATTGCAATTGGC
GCGTTATCTATGCCCATTTTAAATTTAATAGACTCCATTACCATTCCGAGTTTACTGCATGAATCCTCTGAAACGATTCA
TGCGCAATTTGGTATATATAGTCGCGGCTTTGCTTTTACGCAATTAATTGTCGTGTTTGCGAGTGCTATGGTATTTCCGC
TAATTCCATTATTAACGTCAGCTTTAACGAAGCACGACACCCAGTTAGCGAGAGTAACAGTGCAGCGTACAACAGAACTT
GCCCATGTTTTAACAATGCCTATGACAGTTTGGCTCATTGCGTTAACAGTACCTTTAAATGTAGGTTTGTTTACAGATGC
GAAAGGGAGCGGTATGTTAGCCGTTGTGATTGGTAGTTCGTATTTTACTTCACTTATGGTATTATCAATAGGTATTTTGC
AAGGCATTAATCATTCGATGAAAGCTGCATGGATTGTGATTTGTGCAAGTTTCGTAAAGATTATATTCAATATTGTACTT
GTGGGAGAGTTTGGTATAAGCGGAGCAGCTTATAGCACGCTGTTTATATATATATTGATTTGTATTGTAAATCAAATGTA
TATTCGTAAATATCTTGCGTATTCCATTCATATAGGCAGATTTTTTGCTGTCATTTGTGTATCCTGTATTTTAGGATTTG
GTTTATATGAGGTATCTACTACCATACCTGTAACGGATTCAAGATTTTTTGCGCTTTTATACAGCGGAATCGCATTTTGT
TTGGCAACGCTATTATATGGTTTATGTGCATTAAAACTTGACTGGATATCGAAAGAACAGATATCCTTTTTAAGGAAATA
G

Upstream 100 bases:

>100_bases
AAGTGAATTTATATATATTGTGTATACACTTTATCTATTTGAATATTTCGATAAAAATATTCAAAATTCATTCAATATAT
GAAAAGAAAAGAGAAGGAAC

Downstream 100 bases:

>100_bases
AACATTTAGTACTCTCATTTGTAGAGATTCATATCCGCTGATGCGGAATAGATAAAAGCAATGAATAGCTTTAGTAGGGA
AGCTATTAGTTTTATGTTAT

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MNKKFVKGAAILTITTFLSKLLGSFFQIPLQNIAGDEVLGIFRLVFPVYMIALTLSVAGVPVAISKLIAELHEKNEQERI
AKLFTSASIIGSIFGLIGCVVIVLGSSTIANMLGGQETRLSLIITSFALLVAPYMAVYRGYFQGFGDMAPTGVSQVIEQF
VRVFFMLTIAYVCVVWNESSDVVTGGAMIGAVLGVMSSLLYLRVQYSKSPYRYKTKTYTFQDLKRDGKRILHISIPIAIG
ALSMPILNLIDSITIPSLLHESSETIHAQFGIYSRGFAFTQLIVVFASAMVFPLIPLLTSALTKHDTQLARVTVQRTTEL
AHVLTMPMTVWLIALTVPLNVGLFTDAKGSGMLAVVIGSSYFTSLMVLSIGILQGINHSMKAAWIVICASFVKIIFNIVL
VGEFGISGAAYSTLFIYILICIVNQMYIRKYLAYSIHIGRFFAVICVSCILGFGLYEVSTTIPVTDSRFFALLYSGIAFC
LATLLYGLCALKLDWISKEQISFLRK

Sequences:

>Translated_506_residues
MNKKFVKGAAILTITTFLSKLLGSFFQIPLQNIAGDEVLGIFRLVFPVYMIALTLSVAGVPVAISKLIAELHEKNEQERI
AKLFTSASIIGSIFGLIGCVVIVLGSSTIANMLGGQETRLSLIITSFALLVAPYMAVYRGYFQGFGDMAPTGVSQVIEQF
VRVFFMLTIAYVCVVWNESSDVVTGGAMIGAVLGVMSSLLYLRVQYSKSPYRYKTKTYTFQDLKRDGKRILHISIPIAIG
ALSMPILNLIDSITIPSLLHESSETIHAQFGIYSRGFAFTQLIVVFASAMVFPLIPLLTSALTKHDTQLARVTVQRTTEL
AHVLTMPMTVWLIALTVPLNVGLFTDAKGSGMLAVVIGSSYFTSLMVLSIGILQGINHSMKAAWIVICASFVKIIFNIVL
VGEFGISGAAYSTLFIYILICIVNQMYIRKYLAYSIHIGRFFAVICVSCILGFGLYEVSTTIPVTDSRFFALLYSGIAFC
LATLLYGLCALKLDWISKEQISFLRK
>Mature_506_residues
MNKKFVKGAAILTITTFLSKLLGSFFQIPLQNIAGDEVLGIFRLVFPVYMIALTLSVAGVPVAISKLIAELHEKNEQERI
AKLFTSASIIGSIFGLIGCVVIVLGSSTIANMLGGQETRLSLIITSFALLVAPYMAVYRGYFQGFGDMAPTGVSQVIEQF
VRVFFMLTIAYVCVVWNESSDVVTGGAMIGAVLGVMSSLLYLRVQYSKSPYRYKTKTYTFQDLKRDGKRILHISIPIAIG
ALSMPILNLIDSITIPSLLHESSETIHAQFGIYSRGFAFTQLIVVFASAMVFPLIPLLTSALTKHDTQLARVTVQRTTEL
AHVLTMPMTVWLIALTVPLNVGLFTDAKGSGMLAVVIGSSYFTSLMVLSIGILQGINHSMKAAWIVICASFVKIIFNIVL
VGEFGISGAAYSTLFIYILICIVNQMYIRKYLAYSIHIGRFFAVICVSCILGFGLYEVSTTIPVTDSRFFALLYSGIAFC
LATLLYGLCALKLDWISKEQISFLRK

Specific function: Unknown

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 55439; Mature: 55439

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKFVKGAAILTITTFLSKLLGSFFQIPLQNIAGDEVLGIFRLVFPVYMIALTLSVAGV
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
PVAISKLIAELHEKNEQERIAKLFTSASIIGSIFGLIGCVVIVLGSSTIANMLGGQETRL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHH
SLIITSFALLVAPYMAVYRGYFQGFGDMAPTGVSQVIEQFVRVFFMLTIAYVCVVWNESS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCC
DVVTGGAMIGAVLGVMSSLLYLRVQYSKSPYRYKTKTYTFQDLKRDGKRILHISIPIAIG
CEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHCCCCEEEEEEEHHHHH
ALSMPILNLIDSITIPSLLHESSETIHAQFGIYSRGFAFTQLIVVFASAMVFPLIPLLTS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALTKHDTQLARVTVQRTTELAHVLTMPMTVWLIALTVPLNVGLFTDAKGSGMLAVVIGSS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCH
YFTSLMVLSIGILQGINHSMKAAWIVICASFVKIIFNIVLVGEFGISGAAYSTLFIYILI
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
CIVNQMYIRKYLAYSIHIGRFFAVICVSCILGFGLYEVSTTIPVTDSRFFALLYSGIAFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHH
LATLLYGLCALKLDWISKEQISFLRK
HHHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MNKKFVKGAAILTITTFLSKLLGSFFQIPLQNIAGDEVLGIFRLVFPVYMIALTLSVAGV
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
PVAISKLIAELHEKNEQERIAKLFTSASIIGSIFGLIGCVVIVLGSSTIANMLGGQETRL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHH
SLIITSFALLVAPYMAVYRGYFQGFGDMAPTGVSQVIEQFVRVFFMLTIAYVCVVWNESS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCC
DVVTGGAMIGAVLGVMSSLLYLRVQYSKSPYRYKTKTYTFQDLKRDGKRILHISIPIAIG
CEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHCCCCEEEEEEEHHHHH
ALSMPILNLIDSITIPSLLHESSETIHAQFGIYSRGFAFTQLIVVFASAMVFPLIPLLTS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALTKHDTQLARVTVQRTTELAHVLTMPMTVWLIALTVPLNVGLFTDAKGSGMLAVVIGSS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCH
YFTSLMVLSIGILQGINHSMKAAWIVICASFVKIIFNIVLVGEFGISGAAYSTLFIYILI
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
CIVNQMYIRKYLAYSIHIGRFFAVICVSCILGFGLYEVSTTIPVTDSRFFALLYSGIAFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHH
LATLLYGLCALKLDWISKEQISFLRK
HHHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]