| Definition | Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome. |
|---|---|
| Accession | NC_009674 |
| Length | 4,087,024 |
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The map label for this gene is yhdF [H]
Identifier: 152974457
GI number: 152974457
Start: 723741
End: 724607
Strand: Direct
Name: yhdF [H]
Synonym: Bcer98_0632
Alternate gene names: 152974457
Gene position: 723741-724607 (Clockwise)
Preceding gene: 152974455
Following gene: 152974458
Centisome position: 17.71
GC content: 38.06
Gene sequence:
>867_bases ATGACACAGCAGAAAACATTTTTAACATTGCCACCGCAACATCAAAATAAACAACCGGGAGTAGAGTCTCTTATGAATCC ACTTCCTCAATATGATAATCCGTACTATAAGGGAAGCGGGAAATTAAAAGGAAAATATGTGCTTATTACAGGGGGAGATA GTGGCATTGGAAGAGCGGTATCAGTTGCTTTTGCAAAAGAAGGGGCAAATATCGCAATTGCTTATTTAGACGAACATGAA GATGCAAATGAAACAAAAAAGTTAGTAGAGAAACATGGTGCAAAGTGTATATTGCTTCCAGGAGATGTAAGTGATGAACA ACATTGTGAGCAAATTGTGAAAGAAACTGTTTCTCAATTAGGTGGTCTCAATATTCTTGTCAATAATGTCGCGCAGCAAT ATCCGCAGCAAAGTTTAGAATATATTACTGCGCAGCAACTTGAAAAAACATTTCGTATTAATATCTTTTCTTATTTTCAT GTTACAAAAGCGGCATTAGTACATTTAAAGCAGGGCGATGCTATTATTAATACAGCATCTATTGTCGCATATGAAGGAAA TGAGCAACTTATTGATTATGCGGCGACAAAGGGAGCGATTGTTGCTTTTACAAGGTCGCTTGCAAAGTCATTAATGCAAA AAGGAATCCGGGTAAATGGTGTCGCACCGGGCCCTATTTGGACGCCACTTATTCCATCAAGTTTTGATAAAAAGAAAGTA GCTGAATTTGGAAGCGATGTTCCAATGAAGAGACCTGGACAGCCGTATGAATTGGCACCAGCTTACGTATATTTAGCTTC AGAAGATTCAACCTATGTCTCAGGACAAATGATTCATGTCAATGGTGGAGTGATTGTAAATGGATAA
Upstream 100 bases:
>100_bases ACTCCTCTTTAAAATGCAGTGAAAGTACTTGATACATAATTACTTTTAGTAGATATGTACATGATAAGAAGAAAAGAGTA AGAAGGAGTTGAAAGAACGG
Downstream 100 bases:
>100_bases AGTGAAATTTTAATCAGTGGGGGGCTTCATCCCTCACTAATCGGGCTGCTATTTCTCTAAAATAGTGGATAAAGAAAAAG GAAAGAAGAGTATTCATATT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MTQQKTFLTLPPQHQNKQPGVESLMNPLPQYDNPYYKGSGKLKGKYVLITGGDSGIGRAVSVAFAKEGANIAIAYLDEHE DANETKKLVEKHGAKCILLPGDVSDEQHCEQIVKETVSQLGGLNILVNNVAQQYPQQSLEYITAQQLEKTFRINIFSYFH VTKAALVHLKQGDAIINTASIVAYEGNEQLIDYAATKGAIVAFTRSLAKSLMQKGIRVNGVAPGPIWTPLIPSSFDKKKV AEFGSDVPMKRPGQPYELAPAYVYLASEDSTYVSGQMIHVNGGVIVNG
Sequences:
>Translated_288_residues MTQQKTFLTLPPQHQNKQPGVESLMNPLPQYDNPYYKGSGKLKGKYVLITGGDSGIGRAVSVAFAKEGANIAIAYLDEHE DANETKKLVEKHGAKCILLPGDVSDEQHCEQIVKETVSQLGGLNILVNNVAQQYPQQSLEYITAQQLEKTFRINIFSYFH VTKAALVHLKQGDAIINTASIVAYEGNEQLIDYAATKGAIVAFTRSLAKSLMQKGIRVNGVAPGPIWTPLIPSSFDKKKV AEFGSDVPMKRPGQPYELAPAYVYLASEDSTYVSGQMIHVNGGVIVNG >Mature_287_residues TQQKTFLTLPPQHQNKQPGVESLMNPLPQYDNPYYKGSGKLKGKYVLITGGDSGIGRAVSVAFAKEGANIAIAYLDEHED ANETKKLVEKHGAKCILLPGDVSDEQHCEQIVKETVSQLGGLNILVNNVAQQYPQQSLEYITAQQLEKTFRINIFSYFHV TKAALVHLKQGDAIINTASIVAYEGNEQLIDYAATKGAIVAFTRSLAKSLMQKGIRVNGVAPGPIWTPLIPSSFDKKKVA EFGSDVPMKRPGQPYELAPAYVYLASEDSTYVSGQMIHVNGGVIVNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=32.7510917030568, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=32.8125, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=30.5785123966942, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=28, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=28.4046692607004, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=27.6264591439689, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=27.0161290322581, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=31.5, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=26.0700389105058, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=30.1960784313725, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI210032110, Length=210, Percent_Identity=29.5238095238095, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=27.7551020408163, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=25.609756097561, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=26.9430051813472, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI142976729, Length=208, Percent_Identity=29.3269230769231, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=23.7154150197628, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI210032112, Length=206, Percent_Identity=27.6699029126214, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI40254986, Length=142, Percent_Identity=32.3943661971831, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI224922801, Length=176, Percent_Identity=30.1136363636364, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4503301, Length=212, Percent_Identity=27.3584905660377, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7706318, Length=203, Percent_Identity=28.0788177339901, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI33667109, Length=206, Percent_Identity=28.6407766990291, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789378, Length=274, Percent_Identity=48.1751824817518, Blast_Score=264, Evalue=4e-72, Organism=Escherichia coli, GI2367175, Length=242, Percent_Identity=35.1239669421488, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=33.0645161290323, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=29.7959183673469, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=31.4285714285714, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=31.9230769230769, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=30.3643724696356, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=29.8387096774194, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=28.4552845528455, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=24.1106719367589, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787545, Length=258, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=22.7642276422764, Blast_Score=68, Evalue=6e-13, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=36.2549800796813, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=31.6, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=32.8063241106719, Blast_Score=114, Evalue=8e-26, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=32.6923076923077, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=32.4427480916031, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=32.183908045977, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=32.5581395348837, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=32.824427480916, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=32.6848249027237, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=30, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=31.5384615384615, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=30.8880308880309, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=30.188679245283, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=29.6875, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=30.7692307692308, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=28.2868525896414, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=32.6923076923077, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=30.6818181818182, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=29.9242424242424, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=30.0380228136882, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536025, Length=266, Percent_Identity=27.0676691729323, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17536651, Length=264, Percent_Identity=25.3787878787879, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=27.6422764227642, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=28.3524904214559, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=27.2357723577236, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=27.9352226720648, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17564282, Length=190, Percent_Identity=33.1578947368421, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=27.9693486590038, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=29.7435897435897, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=27.5590551181102, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=25.7028112449799, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=29.9465240641711, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982365, Length=248, Percent_Identity=28.2258064516129, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203115, Length=186, Percent_Identity=29.5698924731183, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508895, Length=213, Percent_Identity=25.8215962441315, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6324126, Length=273, Percent_Identity=26.007326007326, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=28.2828282828283, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=257, Percent_Identity=24.5136186770428, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=32.6693227091633, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34.8, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=30.241935483871, Blast_Score=109, Evalue=3e-24, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=32.1285140562249, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=29.4354838709677, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=28.0155642023346, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=28.1124497991968, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=34.136546184739, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI281364892, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24581726, Length=194, Percent_Identity=29.8969072164948, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24665243, Length=213, Percent_Identity=27.6995305164319, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI221331218, Length=213, Percent_Identity=27.6995305164319, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24640492, Length=228, Percent_Identity=25.4385964912281, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24665247, Length=213, Percent_Identity=27.2300469483568, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI221331216, Length=213, Percent_Identity=27.2300469483568, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=27.1356783919598, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31380; Mature: 31249
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQQKTFLTLPPQHQNKQPGVESLMNPLPQYDNPYYKGSGKLKGKYVLITGGDSGIGRAV CCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCEEEEEEECCCCCCCCEE SVAFAKEGANIAIAYLDEHEDANETKKLVEKHGAKCILLPGDVSDEQHCEQIVKETVSQL EEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHH GGLNILVNNVAQQYPQQSLEYITAQQLEKTFRINIFSYFHVTKAALVHLKQGDAIINTAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHEEEECCCEEEEEEE IVAYEGNEQLIDYAATKGAIVAFTRSLAKSLMQKGIRVNGVAPGPIWTPLIPSSFDKKKV EEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHH AEFGSDVPMKRPGQPYELAPAYVYLASEDSTYVSGQMIHVNGGVIVNG HHCCCCCCCCCCCCCCEECCEEEEEECCCCEEEEEEEEEECCCEEEEC >Mature Secondary Structure TQQKTFLTLPPQHQNKQPGVESLMNPLPQYDNPYYKGSGKLKGKYVLITGGDSGIGRAV CCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCEEEEEEECCCCCCCCEE SVAFAKEGANIAIAYLDEHEDANETKKLVEKHGAKCILLPGDVSDEQHCEQIVKETVSQL EEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHH GGLNILVNNVAQQYPQQSLEYITAQQLEKTFRINIFSYFHVTKAALVHLKQGDAIINTAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHEEEECCCEEEEEEE IVAYEGNEQLIDYAATKGAIVAFTRSLAKSLMQKGIRVNGVAPGPIWTPLIPSSFDKKKV EEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHH AEFGSDVPMKRPGQPYELAPAYVYLASEDSTYVSGQMIHVNGGVIVNG HHCCCCCCCCCCCCCCEECCEEEEEECCCCEEEEEEEEEECCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]