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The map label for this gene is yfkH [H]

Identifier: 152974229

GI number: 152974229

Start: 450589

End: 451458

Strand: Direct

Name: yfkH [H]

Synonym: Bcer98_0395

Alternate gene names: 152974229

Gene position: 450589-451458 (Clockwise)

Preceding gene: 152974228

Following gene: 152974230

Centisome position: 11.02

GC content: 35.29

Gene sequence:

>870_bases
ATGAAAAAAATTCTAGAAAAAGCAAGAGGAAATCGTGTCTATTCGTTTGGAAAAGATTTATATGATCGAACGATGCGAGA
TGATGTAGCGGGCTTAGCAGCACAGCTCGCTTATTTCTTCTTGCTTGCTATTTTTCCTGGGCTTGTTTTTGTAATCACGC
TTCTTGGATTTATTGACCTTCAAACAGAGAATGTGCTCAACTTATTGGAGCCTTATGTGCCTGAAGAGGCAATGAACTTA
ATTGAAGTAAATGTAGATCAAGTAATAAATAATCAAAATGGTGGATTACTATCATTTGGTTTATTATCAATGCTATGGTT
TGCTTCAAATGGTGTAAATGCAGTGATGAATGCATTTAATCGTGCTTATGATGTAAAGGAAACGCGCTCTTTCATTGTAA
CAAGAGCTTTGTCTATTGTATTTACACTGGCGATGATTTTTATGATCGTTTTCGCCTTAATTGTGCCTGTTTTTGGACAA
GTAATTGGAGCCGCTGTGTTTAAAGTGCTCGGTTTATCAGAAAGTTTTTCTTTCGTATGGAGTATTATACGATTAGTAGC
GAGCTTTTTAGTTTTATTCGCTTTATTTAGCTTCTTATATACATTTGCACCTGATCGCAAATTAAAAAGAAGAGAAGTTA
TATCCGGAGCATTATTTGCAACAGTTGGATGGATTGTCGTATCGTACTCATTTGCCTATTATGTAGACAAGTTTGCAAAT
TATGCCAATACATATGGTGGCCTTGGTGGTATTATCATTTTGATGTTGTGGTTCTATTTGACTGCTTGGGTCATTTTACT
AGGTGGAGAAATTAATGGATTACTTTACTTTTACCGTACTAATGACAATAATTCCCGGAATGAAAAGTAG

Upstream 100 bases:

>100_bases
TGAGTTACTTATGAAGGACTCTCAGACAGAGGAAAAGAAAACAGAAGCATATGTGGAATTAAAAGAGAATAAAGAAGAGA
AGAAAAGTGTTTAAGGACAA

Downstream 100 bases:

>100_bases
CCCCTTGTTCCATAATAAAAAGGAATAGGGGGGATTATGATGAGTAATAATAAAAAGAATCATAATAACAAAAATAATGG
GAAACAAAAAAGTAGTTCAC

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKKILEKARGNRVYSFGKDLYDRTMRDDVAGLAAQLAYFFLLAIFPGLVFVITLLGFIDLQTENVLNLLEPYVPEEAMNL
IEVNVDQVINNQNGGLLSFGLLSMLWFASNGVNAVMNAFNRAYDVKETRSFIVTRALSIVFTLAMIFMIVFALIVPVFGQ
VIGAAVFKVLGLSESFSFVWSIIRLVASFLVLFALFSFLYTFAPDRKLKRREVISGALFATVGWIVVSYSFAYYVDKFAN
YANTYGGLGGIIILMLWFYLTAWVILLGGEINGLLYFYRTNDNNSRNEK

Sequences:

>Translated_289_residues
MKKILEKARGNRVYSFGKDLYDRTMRDDVAGLAAQLAYFFLLAIFPGLVFVITLLGFIDLQTENVLNLLEPYVPEEAMNL
IEVNVDQVINNQNGGLLSFGLLSMLWFASNGVNAVMNAFNRAYDVKETRSFIVTRALSIVFTLAMIFMIVFALIVPVFGQ
VIGAAVFKVLGLSESFSFVWSIIRLVASFLVLFALFSFLYTFAPDRKLKRREVISGALFATVGWIVVSYSFAYYVDKFAN
YANTYGGLGGIIILMLWFYLTAWVILLGGEINGLLYFYRTNDNNSRNEK
>Mature_289_residues
MKKILEKARGNRVYSFGKDLYDRTMRDDVAGLAAQLAYFFLLAIFPGLVFVITLLGFIDLQTENVLNLLEPYVPEEAMNL
IEVNVDQVINNQNGGLLSFGLLSMLWFASNGVNAVMNAFNRAYDVKETRSFIVTRALSIVFTLAMIFMIVFALIVPVFGQ
VIGAAVFKVLGLSESFSFVWSIIRLVASFLVLFALFSFLYTFAPDRKLKRREVISGALFATVGWIVVSYSFAYYVDKFAN
YANTYGGLGGIIILMLWFYLTAWVILLGGEINGLLYFYRTNDNNSRNEK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790319, Length=308, Percent_Identity=24.6753246753247, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32580; Mature: 32580

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure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HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]