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The map label for this gene is ydcI [H]

Identifier: 152974085

GI number: 152974085

Start: 252018

End: 254186

Strand: Direct

Name: ydcI [H]

Synonym: Bcer98_0241

Alternate gene names: 152974085

Gene position: 252018-254186 (Clockwise)

Preceding gene: 152974084

Following gene: 152974086

Centisome position: 6.17

GC content: 36.75

Gene sequence:

>2169_bases
ATGGAAATGGTAGATAATCGTCAAGTGTTAATGAAAATGTTAGTAAAAGAATTAGGCTTTACTGAAAAACAAATTCGTCA
TGTGATTCAATTAACAGAAGAGGGTAACACAGTTCCATTTATTGCTCGTTACCGAAAAGAATGGACAGGTTCTTTAGATG
AAGTGCAGATTCGTGCAATCTTAGATAGATGGCAGTATGTCATGCAACTCGAAGAGCGAAAAGAAGAAGTGATTCGTCTA
ATCGAGGAAAAGGGTAAATTGACAGAAGAGTTGCACCAACAGATTATTGCTGCAACAAAATTACAGGAAGTAGAGGATTT
ATACCGTCCTTATAAAGAAAAGAGAAGAACAAAAGCAACGATCGCAAAGGAAAAAGGGCTAGAGCCGTTAGCAGAATGGT
TATTGCTATTTTCAAAAGAGGAACCGCTATTTAAAGCAAAGTCCTTTATAAATACTGAGAAAAAAGTGGACTCGGCAGAG
GACGCATTGCAAGGAGCGCAGGATATTATTGCGGAAATGATTTCAGATGACGCTTCCTATCGCACTTGGATTCGAAATGT
TACGTTTAAAAAGGGAATGATTTCTTCTTCTGTGAAAGATGAAGAAAAAGATGAAAAGAACATATATGAGATGTATTACG
GTTATGAAGAAGCAATCCAAAAAATTGTACCACATCGTGTGCTAGCTATGAATCGTGGTGAAAAAGAAGAGATATTAAAA
GTTTCTATTGTGCCGCCTGTAGAAGAAGTGCTTCGTTTTTTACATAAGAAAGTGATTTGTGATGAATCTTCGAAAAGTGC
CATGTATGTACAATTAGCGCTTGAAGATGGATATAAACGTTTAATTCAGCCGTCGATTGAAAGGGAAATTCGTAAGGAAT
TAACAGAAGTAGCAGAAGAGCAAGCGATTCATATTTTTGCTGAGAATTTGCGTAACTTATTATTGCAGCCGCCTATGAAA
GGGAAAGTCGTATTGGCGGTAGATCCTGCATATAGAACAGGCTGTAAATTAGCAGTAGTCGATGATACAGGAAAGGTACT
GCATATTGATGTCATTTATCCGCATCCGCCTGTGAAAAAGTACGATGATGCAAAACAGAAAGTTCTTTCTATTATAAATC
AGTATAAAGTACAAATGATTGCAATTGGAAATGGAACAGCTTCAAGGGAAACAGAAGAATTTATTGTGGATGCCTTGCAA
GATGTTAAACAAGATGTATTTTACATGATTGTCAATGAGGCGGGAGCTAGTGTATATTCAGCTTCTGATTTAGCACGTGA
AGAATTTCCGGATTTACAAGTTGAGGAGAGAAGTGCGGTTTCAATTGGTCGTCGTTTACAAGATCCGCTTGCTGAATTGG
TAAAGATAGATCCAAAATCAGTTGGAGTGGGGCAATATCAACATGATGTATCGCAAAAGAGATTGAACGAATCATTAACA
TTTGTAGTAGAAACAGCTGTTAACCAAGTTGGGGTAAATGTAAATACAGCTTCGGTGCCACTATTGCAATATGTATCAGG
ATTATCCAAAACAGTTGCGAAAAATATTGTTGTAAAACGCGAAGAGAATGGAAAATTTACAAATCGTGCAGAACTTAAGA
AAATACCGCGACTAGGTGCGAAAACATATGAACAATGTATCGGTTTCTTACGGATACTAGAAGGAGAAAACCCATTAGAC
CGAACAAGTATTCATCCTGAACAGTATAAGAATGTTGAATTGCTATTAAACAAAATAGGGTTAACAATTCAAGATGTAGG
AACACCAGAACTACAAAAACGTTTAGAAGGAGTAGACGTTTCGAAATTATCTTCAGAAACCAATATCGGTGAACCTACTT
TAATGGATATTATAGATGCTTTAATTAGCCCTGAACGCGACTTACGTGATGAATTACCGAAACCGTTGCTTAAAAAAGGT
ATTTTGAAACTAGAAGATTTAAAGCGCGGTATGGAATTAGAAGGGACTGTTCGAAACGTTGTTGATTTCGGTGCTTTTAT
AGATATTGGTGTGAAGCAAGATGGATTGGTACATATTTCTAAGTTAAGTAAGCAATTTGTAAAGCATCCATTAGATATTG
TGTCGGTTGGACAAATTGTAAAGGTATGGGTAGATGATGTGGATATGAAAAAGGGACGTGTAGCTTTATCCATGTTGCCT
ATCGAGTAA

Upstream 100 bases:

>100_bases
GCTTTACAAATTAGTTTAGGACTAATAGATTTTTAAATCGGCAGTTTAAGTTGCTCTTTGTAGGGGCAACTTTTTTTATT
AGAGGAGGTTTCGATTATAT

Downstream 100 bases:

>100_bases
GAAAGAAAAGAGAGCAGAAAAGATTGCTCTCTTTTCTTTATGGTAGTTTGCGTGATAAAAAAATAAGTATTCGTTAGGAA
CGTGGAAGTGCAGTCGAATT

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 722; Mature: 722

Protein sequence:

>722_residues
MEMVDNRQVLMKMLVKELGFTEKQIRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRAILDRWQYVMQLEERKEEVIRL
IEEKGKLTEELHQQIIAATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLFSKEEPLFKAKSFINTEKKVDSAE
DALQGAQDIIAEMISDDASYRTWIRNVTFKKGMISSSVKDEEKDEKNIYEMYYGYEEAIQKIVPHRVLAMNRGEKEEILK
VSIVPPVEEVLRFLHKKVICDESSKSAMYVQLALEDGYKRLIQPSIEREIRKELTEVAEEQAIHIFAENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAVVDDTGKVLHIDVIYPHPPVKKYDDAKQKVLSIINQYKVQMIAIGNGTASRETEEFIVDALQ
DVKQDVFYMIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVPLLQYVSGLSKTVAKNIVVKREENGKFTNRAELKKIPRLGAKTYEQCIGFLRILEGENPLD
RTSIHPEQYKNVELLLNKIGLTIQDVGTPELQKRLEGVDVSKLSSETNIGEPTLMDIIDALISPERDLRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDVDMKKGRVALSMLP
IE

Sequences:

>Translated_722_residues
MEMVDNRQVLMKMLVKELGFTEKQIRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRAILDRWQYVMQLEERKEEVIRL
IEEKGKLTEELHQQIIAATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLFSKEEPLFKAKSFINTEKKVDSAE
DALQGAQDIIAEMISDDASYRTWIRNVTFKKGMISSSVKDEEKDEKNIYEMYYGYEEAIQKIVPHRVLAMNRGEKEEILK
VSIVPPVEEVLRFLHKKVICDESSKSAMYVQLALEDGYKRLIQPSIEREIRKELTEVAEEQAIHIFAENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAVVDDTGKVLHIDVIYPHPPVKKYDDAKQKVLSIINQYKVQMIAIGNGTASRETEEFIVDALQ
DVKQDVFYMIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVPLLQYVSGLSKTVAKNIVVKREENGKFTNRAELKKIPRLGAKTYEQCIGFLRILEGENPLD
RTSIHPEQYKNVELLLNKIGLTIQDVGTPELQKRLEGVDVSKLSSETNIGEPTLMDIIDALISPERDLRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDVDMKKGRVALSMLP
IE
>Mature_722_residues
MEMVDNRQVLMKMLVKELGFTEKQIRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRAILDRWQYVMQLEERKEEVIRL
IEEKGKLTEELHQQIIAATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLFSKEEPLFKAKSFINTEKKVDSAE
DALQGAQDIIAEMISDDASYRTWIRNVTFKKGMISSSVKDEEKDEKNIYEMYYGYEEAIQKIVPHRVLAMNRGEKEEILK
VSIVPPVEEVLRFLHKKVICDESSKSAMYVQLALEDGYKRLIQPSIEREIRKELTEVAEEQAIHIFAENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAVVDDTGKVLHIDVIYPHPPVKKYDDAKQKVLSIINQYKVQMIAIGNGTASRETEEFIVDALQ
DVKQDVFYMIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVPLLQYVSGLSKTVAKNIVVKREENGKFTNRAELKKIPRLGAKTYEQCIGFLRILEGENPLD
RTSIHPEQYKNVELLLNKIGLTIQDVGTPELQKRLEGVDVSKLSSETNIGEPTLMDIIDALISPERDLRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDVDMKKGRVALSMLP
IE

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=768, Percent_Identity=36.71875, Blast_Score=430, Evalue=1e-120,
Organism=Homo sapiens, GI27597090, Length=549, Percent_Identity=22.2222222222222, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87082262, Length=727, Percent_Identity=43.7414030261348, Blast_Score=570, Evalue=1e-164,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=45.3333333333333, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=753, Percent_Identity=32.5365205843293, Blast_Score=298, Evalue=5e-81,
Organism=Caenorhabditis elegans, GI17552892, Length=318, Percent_Identity=25.7861635220126, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI62484314, Length=748, Percent_Identity=33.9572192513369, Blast_Score=391, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 82210; Mature: 82210

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMVDNRQVLMKMLVKELGFTEKQIRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRAI
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
LDRWQYVMQLEERKEEVIRLIEEKGKLTEELHQQIIAATKLQEVEDLYRPYKEKRRTKAT
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKEKGLEPLAEWLLLFSKEEPLFKAKSFINTEKKVDSAEDALQGAQDIIAEMISDDASY
HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHCCHHH
RTWIRNVTFKKGMISSSVKDEEKDEKNIYEMYYGYEEAIQKIVPHRVLAMNRGEKEEILK
HHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCCHHHEEE
VSIVPPVEEVLRFLHKKVICDESSKSAMYVQLALEDGYKRLIQPSIEREIRKELTEVAEE
EECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHH
QAIHIFAENLRNLLLQPPMKGKVVLAVDPAYRTGCKLAVVDDTGKVLHIDVIYPHPPVKK
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCC
YDDAKQKVLSIINQYKVQMIAIGNGTASRETEEFIVDALQDVKQDVFYMIVNEAGASVYS
CCHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FVVETAVNQVGVNVNTASVPLLQYVSGLSKTVAKNIVVKREENGKFTNRAELKKIPRLGA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCH
KTYEQCIGFLRILEGENPLDRTSIHPEQYKNVELLLNKIGLTIQDVGTPELQKRLEGVDV
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHCCEEECCCCHHHHHHHCCCCH
SKLSSETNIGEPTLMDIIDALISPERDLRDELPKPLLKKGILKLEDLKRGMELEGTVRNV
HHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
VDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDVDMKKGRVALSMLP
HHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
IE
CC
>Mature Secondary Structure
MEMVDNRQVLMKMLVKELGFTEKQIRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRAI
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
LDRWQYVMQLEERKEEVIRLIEEKGKLTEELHQQIIAATKLQEVEDLYRPYKEKRRTKAT
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKEKGLEPLAEWLLLFSKEEPLFKAKSFINTEKKVDSAEDALQGAQDIIAEMISDDASY
HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHCCHHH
RTWIRNVTFKKGMISSSVKDEEKDEKNIYEMYYGYEEAIQKIVPHRVLAMNRGEKEEILK
HHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCCHHHEEE
VSIVPPVEEVLRFLHKKVICDESSKSAMYVQLALEDGYKRLIQPSIEREIRKELTEVAEE
EECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHH
QAIHIFAENLRNLLLQPPMKGKVVLAVDPAYRTGCKLAVVDDTGKVLHIDVIYPHPPVKK
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCC
YDDAKQKVLSIINQYKVQMIAIGNGTASRETEEFIVDALQDVKQDVFYMIVNEAGASVYS
CCHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FVVETAVNQVGVNVNTASVPLLQYVSGLSKTVAKNIVVKREENGKFTNRAELKKIPRLGA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCH
KTYEQCIGFLRILEGENPLDRTSIHPEQYKNVELLLNKIGLTIQDVGTPELQKRLEGVDV
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHCCEEECCCCHHHHHHHCCCCH
SKLSSETNIGEPTLMDIIDALISPERDLRDELPKPLLKKGILKLEDLKRGMELEGTVRNV
HHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
VDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDVDMKKGRVALSMLP
HHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
IE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]