Click here to switch to the map view.

The map label for this gene is yohD [H]

Identifier: 152971114

GI number: 152971114

Start: 2823476

End: 2824045

Strand: Direct

Name: yohD [H]

Synonym: KPN_02575

Alternate gene names: 152971114

Gene position: 2823476-2824045 (Clockwise)

Preceding gene: 152971109

Following gene: 152971121

Centisome position: 53.12

GC content: 62.11

Gene sequence:

>570_bases
ATGGATATCAATCACCTGATTTCCCAGTATGGCTACGCGGCGCTGATCGTCGGCAGCATGGCGGAAGGTGAGACAATTAC
CCTGCTGGGCGGCGTCGCGGCGCATCAGGGGCTACTGAAATTTCCCCTGGTGGTGATCGCCGTCGCCCTCGGCGGGATGA
TTGGCGATCAGCTGCTCTATCTGGTCGGTCGCCGCTTCGGGGGACGCATCCTGCGCCGTTTCGCCAGTCAGAAAGCGCGG
ATCCGTAAAGCGCAGCGTATGATCCAGCACCGGCCGTGGCTGTTTGTCATCGGCACCCGCTTTATGTATGGCTTCCGGGT
AATCGGCCCCCTGCTGATCGGCGCCAGCCGCCTGCCGCCGCGCATTTTCCTGCCGCTGAATATTGTCGGAGCGCTGGTGT
GGGCCCTGCTGTTTACCACCATTGGCTATCTCGGCGGCGAGGTGGTTGGCCCGTGGCTGCACCATCTGGATGCCCATCTG
AAGCACTGGATCTGGCTGATCCTCGCGGTGGTGGTGGTGGTGGCCGCCCACTGGTGGCTCAGGCGGCGCGAGAGTAAGAA
GAAAGACTAA

Upstream 100 bases:

>100_bases
GTAGATTATTTTATGTACAGCACAGAAAATTCTGCGTCGCCGCGTTTTGGTCAGCAGGGTGTATGATTAAGAGGTGATGA
GGTAAGGAGAAAAGCTTTTT

Downstream 100 bases:

>100_bases
GCGGCGCGCCCGCGGGCGCACCGTGGTTGGCGGTTACTTCACCGTCTGGTGGTAGCCGCCGCCGAGGGCCGAGGTCAGTT
GAATGCTAGCGTCAATCCAC

Product: putative integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MDINHLISQYGYAALIVGSMAEGETITLLGGVAAHQGLLKFPLVVIAVALGGMIGDQLLYLVGRRFGGRILRRFASQKAR
IRKAQRMIQHRPWLFVIGTRFMYGFRVIGPLLIGASRLPPRIFLPLNIVGALVWALLFTTIGYLGGEVVGPWLHHLDAHL
KHWIWLILAVVVVVAAHWWLRRRESKKKD

Sequences:

>Translated_189_residues
MDINHLISQYGYAALIVGSMAEGETITLLGGVAAHQGLLKFPLVVIAVALGGMIGDQLLYLVGRRFGGRILRRFASQKAR
IRKAQRMIQHRPWLFVIGTRFMYGFRVIGPLLIGASRLPPRIFLPLNIVGALVWALLFTTIGYLGGEVVGPWLHHLDAHL
KHWIWLILAVVVVVAAHWWLRRRESKKKD
>Mature_189_residues
MDINHLISQYGYAALIVGSMAEGETITLLGGVAAHQGLLKFPLVVIAVALGGMIGDQLLYLVGRRFGGRILRRFASQKAR
IRKAQRMIQHRPWLFVIGTRFMYGFRVIGPLLIGASRLPPRIFLPLNIVGALVWALLFTTIGYLGGEVVGPWLHHLDAHL
KHWIWLILAVVVVVAAHWWLRRRESKKKD

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=189, Percent_Identity=74.6031746031746, Blast_Score=273, Evalue=4e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 21243; Mature: 21243

Theoretical pI: Translated: 11.81; Mature: 11.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINHLISQYGYAALIVGSMAEGETITLLGGVAAHQGLLKFPLVVIAVALGGMIGDQLLY
CCHHHHHHHHCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVGRRFGGRILRRFASQKARIRKAQRMIQHRPWLFVIGTRFMYGFRVIGPLLIGASRLPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCC
RIFLPLNIVGALVWALLFTTIGYLGGEVVGPWLHHLDAHLKHWIWLILAVVVVVAAHWWL
EEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRESKKKD
HHHHHCCCC
>Mature Secondary Structure
MDINHLISQYGYAALIVGSMAEGETITLLGGVAAHQGLLKFPLVVIAVALGGMIGDQLLY
CCHHHHHHHHCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVGRRFGGRILRRFASQKARIRKAQRMIQHRPWLFVIGTRFMYGFRVIGPLLIGASRLPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCC
RIFLPLNIVGALVWALLFTTIGYLGGEVVGPWLHHLDAHLKHWIWLILAVVVVVAAHWWL
EEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRESKKKD
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]