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The map label for this gene is yecD [H]

Identifier: 152970928

GI number: 152970928

Start: 2606243

End: 2606809

Strand: Direct

Name: yecD [H]

Synonym: KPN_02381

Alternate gene names: 152970928

Gene position: 2606243-2606809 (Clockwise)

Preceding gene: 152970921

Following gene: 152970929

Centisome position: 49.03

GC content: 62.79

Gene sequence:

>567_bases
ATGTTAGAACTCAATGCAAAAAACACGGCGCTGGTGGTAATCGATCTGCAGGAAGGCATTCTGCCTTTCGCCGGCGGCCC
GCATCGGGCTGACGAGGTGGTGGCGCGCGCCGCTCGCCTGGCAGACAAGTGCCGGCAACAGGGTTCGCCGGTCATCATGG
TCCGCGTGGGCTGGTCGGCCGATTTCGCCGAAGCGCTGAAACAGCCTGTCGACGCTCAGGCCGGGGCGCATACGCTGCCC
GAAAACTGGTGGACCTACCCGGCCACGCTGGGTAAGCAGGAGAGCGATATCGAAGTGACCAAACGCCAGTGGGGCGCGTT
CTATGGCACCGACCTTGAGCTTCAGCTGCGCCGCCGCGGGATCGACACCATTATTCTCTGCGGCATCTCCACCAACATCG
GCGTCGAATCCACCGCCCGCAATGCCTGGGAGCTGGGTTTTAACCTGGTCATCGCCGAAGATGCCTGCAGCGCCGCCTCC
GCCGAGCAGCATCAGTGCAGTATGACGCATATTTTCCCGCGCATCGGCCGGGTGCGCAGTACCGAGGAGATCCTCACGGC
GCTATGA

Upstream 100 bases:

>100_bases
AACGTCCACACTCACATAAATTAACAAAATTTGTTACTCTTTTGCTGAAGCCGCAAAGGTATTGTAGCCGCCTGACAACA
GATGAAGATACGGGGATACC

Downstream 100 bases:

>100_bases
TTTATATTGGGCTTCCCCAGTGGTCGCACCCGAAATGGGTGCGCCTTGGCATCACCAGCCTTGAAGAGTACGCCCGCCAC
TTTAACTGTGTGGAGGGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSADFAEALKQPVDAQAGAHTLP
ENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAAS
AEQHQCSMTHIFPRIGRVRSTEEILTAL

Sequences:

>Translated_188_residues
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSADFAEALKQPVDAQAGAHTLP
ENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAAS
AEQHQCSMTHIFPRIGRVRSTEEILTAL
>Mature_188_residues
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSADFAEALKQPVDAQAGAHTLP
ENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAAS
AEQHQCSMTHIFPRIGRVRSTEEILTAL

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=188, Percent_Identity=81.3829787234042, Blast_Score=318, Evalue=2e-88,
Organism=Escherichia coli, GI87081820, Length=214, Percent_Identity=28.0373831775701, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786811, Length=196, Percent_Identity=25.5102040816327, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20613; Mature: 20613

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSA
CEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
DFAEALKQPVDAQAGAHTLPENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRG
HHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCCCCCCCEEHHHHCC
IDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHQCSMTHIFPRIGRVRS
CCEEEEEECCCCCCCCHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
TEEILTAL
HHHHHHCC
>Mature Secondary Structure
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSA
CEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
DFAEALKQPVDAQAGAHTLPENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRG
HHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCCCCCCCEEHHHHCC
IDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHQCSMTHIFPRIGRVRS
CCEEEEEECCCCCCCCHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
TEEILTAL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]