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The map label for this gene is yjiE [H]

Identifier: 152970833

GI number: 152970833

Start: 2502297

End: 2503190

Strand: Direct

Name: yjiE [H]

Synonym: KPN_02286

Alternate gene names: 152970833

Gene position: 2502297-2503190 (Clockwise)

Preceding gene: 152970831

Following gene: 152970844

Centisome position: 47.08

GC content: 52.35

Gene sequence:

>894_bases
GTGTTGGCAAATCTGGAAGTAAAATGGCTGTATGATGTGATTGCCCTCGAGGAGTCGCGCAGCTTTACCCTGGCGGCCAA
AGCCCGCAACATCTCTCAGTCCTCGTTCAGTCGACGCATCCAGTCGCTGGAGGCTTCCCTCGGATTCAGCATCTTCGATC
GTAGCGCCAACCCTCTGCAGCTGACCAACCGCGGGAAAATTTTTGTCGGCTATGCGCGAAATATGCTCGATGACATGGAT
TTTCAGATCAGCCGTATTAAGGGTTTAAATAACACTACCCAGAAAATAAGAATCGACGCCGCCCCTTCGCTGTCGGTGTT
ATTACTGCCGGAGATCATCGCCGGTTACACCGACCGTAAAAATAAGACTTTTCATGTTGAATCGATTAACGTCAACGACG
CCGTATTTAACCTGAAAGAGGGAAAAAGCGATTTTATCCTCTCCTTCTATAATGAAGAATTAATGAACTATCCGTTTATT
AATCATAAAATTTTTGATTCTTACCTGCACCTGGTCTCTCCCTGCGACGAACATGGCCGCCCGCTGTTTCATTTACATCG
CGGCGTGCTGCCGCTGATGAAATACGCCAACGACAGCTATATGGGGCGCCAGGTGAACCAGGTGATCGATCGCACGCCGG
AGATCACCTTCTCCCTTACGTTTGTCTCTTCCATGAGCGAGCTGCTCAAGCGCATGATCCTCAATGGCGACGGCGTGGGC
TGGCTGCCGCAGTACTCCATTCAGCGCGAGCTGGACGAAGGCCGGCTGACGATCCTCGATGAGAGCCTGTCGCTGCCGAT
CGGCGCCTGGCTCTACCGCTCCGGCTCGCGGCTTAACCAGGCCGCCGAACGTTTCTGGCAGCACATTAAAACCCGTAACG
AACCGCGGGAATAA

Upstream 100 bases:

>100_bases
AAAAAATGTTAACACCTGTCGATAATTATGTTAATTGCATAGTTTCTATGCGCTATGCTAAAATTGCATAGCCTTTATTG
CGTTTTTGAGGACTGGATCG

Downstream 100 bases:

>100_bases
CCCCCTCAGCCGCTGATCCCCAGATATGCCTTACGCACCTCCGGGTCGTTGAGCAGCGTCTGGCCGCTACCGCTCAGGCG
GATCTGGCCGTTCACCATCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQLTNRGKIFVGYARNMLDDMD
FQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAGYTDRKNKTFHVESINVNDAVFNLKEGKSDFILSFYNEELMNYPFI
NHKIFDSYLHLVSPCDEHGRPLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILNGDGVG
WLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEPRE

Sequences:

>Translated_297_residues
MLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQLTNRGKIFVGYARNMLDDMD
FQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAGYTDRKNKTFHVESINVNDAVFNLKEGKSDFILSFYNEELMNYPFI
NHKIFDSYLHLVSPCDEHGRPLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILNGDGVG
WLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEPRE
>Mature_297_residues
MLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQLTNRGKIFVGYARNMLDDMD
FQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAGYTDRKNKTFHVESINVNDAVFNLKEGKSDFILSFYNEELMNYPFI
NHKIFDSYLHLVSPCDEHGRPLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILNGDGVG
WLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEPRE

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=292, Percent_Identity=44.8630136986301, Blast_Score=263, Evalue=7e-72,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34172; Mature: 34172

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQ
CCCCCCHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHCCHHEECCCCCCEE
LTNRGKIFVGYARNMLDDMDFQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAGYTDRK
EECCCCEEEEEHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCHHEEHHHHHCCCCCCC
NKTFHVESINVNDAVFNLKEGKSDFILSFYNEELMNYPFINHKIFDSYLHLVSPCDEHGR
CCEEEEEEECCCHHEEEECCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHCC
PLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILNGDGVG
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCC
WLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEPRE
CCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQ
CCCCCCHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHCCHHEECCCCCCEE
LTNRGKIFVGYARNMLDDMDFQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAGYTDRK
EECCCCEEEEEHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCHHEEHHHHHCCCCCCC
NKTFHVESINVNDAVFNLKEGKSDFILSFYNEELMNYPFINHKIFDSYLHLVSPCDEHGR
CCEEEEEEECCCHHEEEECCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHCC
PLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILNGDGVG
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCC
WLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEPRE
CCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]