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The map label for this gene is rnfC [H]

Identifier: 152970518

GI number: 152970518

Start: 2162284

End: 2164431

Strand: Direct

Name: rnfC [H]

Synonym: KPN_01966

Alternate gene names: 152970518

Gene position: 2162284-2164431 (Clockwise)

Preceding gene: 152970517

Following gene: 152970519

Centisome position: 40.68

GC content: 64.66

Gene sequence:

>2148_bases
ATGTTTAAGCTATTTTCCGCTTTCCGAAAAGACAAGGTCTGGGATTTCAACGGCGGTATTCACCCGCCTGAAATGAAAAC
CCAGTCTAACGGCACCCCGCTGCGTCAGGTTTCCCTGCCGCAGCGCTTTGTTATCCCGTTGAAGCAGCACATTGGCGCCG
AGGGCGAACTGTGCGTTAAAGTGGGCGACCGGGTGCTGCGCGGCCAGCCGCTGACCCGCGGCTGGGGAAGAATGCTGCCC
GTTCACGCCCCGACTTCCGGCACCATTGCCGCCATCGCTCCGCACACTACCGCGCACCCGTCGGCTCTGGCGGAGATGAG
CGTGATCATTGACGCCGACGGCGAAGACCGCTGGATCGAGCGCGATGGCTGGAGCGACTATCAGACCCGCACGCGTGAAG
CGCTGATCGAGCGTATCCACCAGTTTGGCGTTGCTGGCCTCGGCGGCGCAGGCTTCCCCACCGGCAGTAAACTGCGCGGT
GGCGGAGATAAAATTAAAACGCTGATCATTAACGCCGCCGAGTGCGAGCCCTATATCACGGCGGATGACCGCCTGATGCA
GGACTGCGCGGCGCAGATTGTCGAGGGTATCCGCATCCTCGCTCATATACTGCAGCCTGAAGAAGTGCTGATCGGCATTG
AAGACAATAAGCCGCAGGCCATCTCAATGCTGCGGGCGGTGCTCTGCGACGCCCATGGCATTTCGCTGCGCGTGATCCCC
ACCAAATATCCCTCCGGTGGCGCCAAGCAGCTCACCCAAATTCTCACCGGCAAACAGGTACCGCACGGCGGTCGTTCATC
GGACATTGGCGTGCTGATGCAGAACGTCGGTACGGCTTATGCGGTGAAACGCGCGGTGATTGACGGTGAGCCGTTAACCG
AGCGCGTGGTCACCCTCACCGGCGAAGCGGTAACCAGACCGGGCAATGTCTGGGCGCGTCTTGGCACGCCGGTGCGCCAT
CTATTGAACGATGCCGGCTTCTGCCCCAGCGCCGAGCCAATGGTGATCATGGGCGGCCCGCTGATGGGCTTTACCCTGCC
GTGGCTCGACGTCCCGGTGGTGAAGATCACCAACTGTTTGCTGGCGCCTTCCGCCAACGAGATGGGCGAACCGCAGGAAG
AGAAAGGCTGCATTCGCTGCAGCGCCTGCGCTGACGCCTGCCCGGCCGATCTGCTGCCGCAGCAGCTGTACTGGTTCAGC
AAAGGTCAGCAGCACGATAAAGCCACTGCCCATAATCTGGCGGACTGCATCGAGTGCGGCGCCTGCGCGTGGGTATGTCC
AAGTAATATTCCGCTGGTGCAGTACTTCCGTCAGGAAAAGGCCGAGATCGCGGCGATTCGTCAGGAAGAGCAGCGCGCTG
CGGAAGCCAAAGCCCGATTCGAGGCCCGACAGGCGCGCCTGGAGCGTGAGAAAGCTGCGCGCGCCGAGCGGCATAAAAAA
GCCGCCGTTCAGCCTGCCGCCAAAGATCAGGAGGCGATTAGCGCCGCCCTGGCCCGGGTACGGGATAAACAGCGCGATGC
CGCGCAGCCGATCGTGATCCAGGCCGGCGCCAAACCTGACAACAGCGAGGCAATTGCCGCCCGCGAAGCGCGTAAGGCTG
AGGCCCGGGCGCGCAAAGCGCAGCAGCAGGACGCCCCGGCCGCCGAACCGGTCGACCCGCGCAAGGCGGCGGTGGAAGCC
GCCATCGCCCGCGCCAAAGCGCGTAAAGCCGAACAGCAGGCCGCGCCGGTGGAAGCCCCGGCCGCCGAACCGGTCGACCC
GCGCAAGGCGGCGGTGGAAGCCGCTATCGCCCGCGCCAAAGCGCGTAAAGCCGAACAGCAGGCCGCGCCGGTGGACGCCC
CGGCCGCCGAACCGGTCGACCCGCGCAAGGCGGCGGTGGAAGCCGCTATCGCCCGCGCTAAAGCGCGTAAAGCAGAACAG
CAGGCCGCGCCGGTGGACGCCCCGGCCGCCGAACCGGTCGACCCGCGCAAGGCGGCGGTGGAAGCCGCTATCGCCCGCGC
CAAAGCGCGTAAAGCCGAACAGCAGGCCACACAACAGGATCTCGCGTCAGCCGCAGCCAATGACGACCCGCGCAAAGCGG
CCGTCGCCGCGGCTATCGCCCGCGTTCAGGCGCGTAAAGCAACACAGCAGGCAGTTAACGAGGAATAA

Upstream 100 bases:

>100_bases
CCGACCCAGTGCATTTCACTCGTTCCGGTGGCCACCACCCCGGAGACCTGGAAATGGGATCTGCATACGATCCCGGTGCG
AAATATTCCTGTGGAACAAC

Downstream 100 bases:

>100_bases
ATGGTTTTCAGAATCGCAAGCTCCCCCTATACCCATAACCAGCGGCAGACCTCGCGTATTATGCTGCTGGTGCTGCTCGC
CGCTGTGCCTGGCATTGTGG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 715; Mature: 715

Protein sequence:

>715_residues
MFKLFSAFRKDKVWDFNGGIHPPEMKTQSNGTPLRQVSLPQRFVIPLKQHIGAEGELCVKVGDRVLRGQPLTRGWGRMLP
VHAPTSGTIAAIAPHTTAHPSALAEMSVIIDADGEDRWIERDGWSDYQTRTREALIERIHQFGVAGLGGAGFPTGSKLRG
GGDKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAISMLRAVLCDAHGISLRVIP
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPLTERVVTLTGEAVTRPGNVWARLGTPVRH
LLNDAGFCPSAEPMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANEMGEPQEEKGCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHNLADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEQRAAEAKARFEARQARLEREKAARAERHKK
AAVQPAAKDQEAISAALARVRDKQRDAAQPIVIQAGAKPDNSEAIAAREARKAEARARKAQQQDAPAAEPVDPRKAAVEA
AIARAKARKAEQQAAPVEAPAAEPVDPRKAAVEAAIARAKARKAEQQAAPVDAPAAEPVDPRKAAVEAAIARAKARKAEQ
QAAPVDAPAAEPVDPRKAAVEAAIARAKARKAEQQATQQDLASAAANDDPRKAAVAAAIARVQARKATQQAVNEE

Sequences:

>Translated_715_residues
MFKLFSAFRKDKVWDFNGGIHPPEMKTQSNGTPLRQVSLPQRFVIPLKQHIGAEGELCVKVGDRVLRGQPLTRGWGRMLP
VHAPTSGTIAAIAPHTTAHPSALAEMSVIIDADGEDRWIERDGWSDYQTRTREALIERIHQFGVAGLGGAGFPTGSKLRG
GGDKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAISMLRAVLCDAHGISLRVIP
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPLTERVVTLTGEAVTRPGNVWARLGTPVRH
LLNDAGFCPSAEPMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANEMGEPQEEKGCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHNLADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEQRAAEAKARFEARQARLEREKAARAERHKK
AAVQPAAKDQEAISAALARVRDKQRDAAQPIVIQAGAKPDNSEAIAAREARKAEARARKAQQQDAPAAEPVDPRKAAVEA
AIARAKARKAEQQAAPVEAPAAEPVDPRKAAVEAAIARAKARKAEQQAAPVDAPAAEPVDPRKAAVEAAIARAKARKAEQ
QAAPVDAPAAEPVDPRKAAVEAAIARAKARKAEQQATQQDLASAAANDDPRKAAVAAAIARVQARKATQQAVNEE
>Mature_715_residues
MFKLFSAFRKDKVWDFNGGIHPPEMKTQSNGTPLRQVSLPQRFVIPLKQHIGAEGELCVKVGDRVLRGQPLTRGWGRMLP
VHAPTSGTIAAIAPHTTAHPSALAEMSVIIDADGEDRWIERDGWSDYQTRTREALIERIHQFGVAGLGGAGFPTGSKLRG
GGDKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAISMLRAVLCDAHGISLRVIP
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPLTERVVTLTGEAVTRPGNVWARLGTPVRH
LLNDAGFCPSAEPMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANEMGEPQEEKGCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHNLADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEQRAAEAKARFEARQARLEREKAARAERHKK
AAVQPAAKDQEAISAALARVRDKQRDAAQPIVIQAGAKPDNSEAIAAREARKAEARARKAQQQDAPAAEPVDPRKAAVEA
AIARAKARKAEQQAAPVEAPAAEPVDPRKAAVEAAIARAKARKAEQQAAPVDAPAAEPVDPRKAAVEAAIARAKARKAEQ
QAAPVDAPAAEPVDPRKAAVEAAIARAKARKAEQQATQQDLASAAANDDPRKAAVAAAIARVQARKATQQAVNEE

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=714, Percent_Identity=83.6134453781513, Blast_Score=1040, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 76630; Mature: 76630

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLFSAFRKDKVWDFNGGIHPPEMKTQSNGTPLRQVSLPQRFVIPLKQHIGAEGELCVK
CCHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEHH
VGDRVLRGQPLTRGWGRMLPVHAPTSGTIAAIAPHTTAHPSALAEMSVIIDADGEDRWIE
HHHHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCHHHHHEEEEEEECCCCCCCCC
RDGWSDYQTRTREALIERIHQFGVAGLGGAGFPTGSKLRGGGDKIKTLIINAAECEPYIT
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAISMLRAVLCDAHGISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPLTERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHEEC
GEAVTRPGNVWARLGTPVRHLLNDAGFCPSAEPMVIMGGPLMGFTLPWLDVPVVKITNCL
CCHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQHDKATAHNLADCIECG
CCCCCHHCCCCHHHCCCEEEHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEQRAAEAKARFEARQARLEREKAARAERHKK
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDQEAISAALARVRDKQRDAAQPIVIQAGAKPDNSEAIAAREARKAEARARKA
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
QQQDAPAAEPVDPRKAAVEAAIARAKARKAEQQAAPVEAPAAEPVDPRKAAVEAAIARAK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
ARKAEQQAAPVDAPAAEPVDPRKAAVEAAIARAKARKAEQQAAPVDAPAAEPVDPRKAAV
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
EAAIARAKARKAEQQATQQDLASAAANDDPRKAAVAAAIARVQARKATQQAVNEE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFKLFSAFRKDKVWDFNGGIHPPEMKTQSNGTPLRQVSLPQRFVIPLKQHIGAEGELCVK
CCHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEHH
VGDRVLRGQPLTRGWGRMLPVHAPTSGTIAAIAPHTTAHPSALAEMSVIIDADGEDRWIE
HHHHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCHHHHHEEEEEEECCCCCCCCC
RDGWSDYQTRTREALIERIHQFGVAGLGGAGFPTGSKLRGGGDKIKTLIINAAECEPYIT
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAISMLRAVLCDAHGISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPLTERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHEEC
GEAVTRPGNVWARLGTPVRHLLNDAGFCPSAEPMVIMGGPLMGFTLPWLDVPVVKITNCL
CCHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQHDKATAHNLADCIECG
CCCCCHHCCCCHHHCCCEEEHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEQRAAEAKARFEARQARLEREKAARAERHKK
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDQEAISAALARVRDKQRDAAQPIVIQAGAKPDNSEAIAAREARKAEARARKA
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
QQQDAPAAEPVDPRKAAVEAAIARAKARKAEQQAAPVEAPAAEPVDPRKAAVEAAIARAK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
ARKAEQQAAPVDAPAAEPVDPRKAAVEAAIARAKARKAEQQAAPVDAPAAEPVDPRKAAV
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
EAAIARAKARKAEQQATQQDLASAAANDDPRKAAVAAAIARVQARKATQQAVNEE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA