Click here to switch to the map view.

The map label for this gene is ydcO [H]

Identifier: 152970488

GI number: 152970488

Start: 2132203

End: 2133369

Strand: Direct

Name: ydcO [H]

Synonym: KPN_01936

Alternate gene names: 152970488

Gene position: 2132203-2133369 (Clockwise)

Preceding gene: 152970484

Following gene: 152970490

Centisome position: 40.12

GC content: 66.58

Gene sequence:

>1167_bases
ATGCGCTCGTTTAGTCTTCCGCTTCCCACTCTGTTCGCTGGCTTCGTCGCCGTGTTGGTGGGGTACGCCAGCTCCGCCGC
CATCATCTGGCAGGCCGCCGCCGCGGCCGGCGCTACCCCCGGGCAGATCGCCGGCTGGATGACGGCTCTTGGCCTCGCCA
TGGGCATCAGTACTCTCGCGCTGAGCGCCTGGCGGAAAGTTCCTGTGCTCACCGCCTGGTCAACGCCGGGCGCTGCGCTG
TTAGTTAGCGGCCTGCAGGGGGTGACCCTCGCCGAGGCCGTGGGGATCTTTATTTTCGCCAACGCGCTAATCGTTATCTG
CGGCGCCACCGGCCTGTTTGCCCGGCTGATGCAGATCATTCCTCATTCGCTGGCCGCCGCGATGCTGGCTGGGATCCTGC
TACGGTTTGGTTTGCAGGCCTTCGCCGGCTTACAGGATCATCTGCCGCTGTGCGGCGGGATGCTCGCCGCCTGGCTGCTG
TGTAAAGCGCTGTGCCCCCGCTTCGCCGTGGTGGCCGCGCTGGTGATTGGAGCGCTGATTGCGGCGGCGTCCGGGGATGT
GGCTAGCGCCGCCGTGCCGCTGGCATTTGTGACGCCGGAATGGGTCGCCCCGCAGTTTACTCCGGCGCTTTTGCTCAGCG
TCGGTCTGCCGTTCTTCCTCGTCACCATGGCCTCGCAGAACGCTCCGGGGTTCGCCACCCTGCAGGCATCAGGCTATACC
GTACCGGTCTCCGCACTGATCGTCGTTTGCGGGGGGTTGGCACTACTGCTGGCGCCGTTTGGGGTTTATTCCATCTGCAT
CGCGGCGATCACCGCTGCGATTTGCCAGAGCCCGGAGGCGCACCCGGATCCGAACCAGCGCTGGCTGGCGGCCATAGCCG
CGGGCGGTTTTTATCTGCTGGCCGGTCTGTTCGGCGGGTCAATCACCGCCCTGATGTCGGCCCTGCCGCCGGCGTGGATC
CAGATGCTGGCGGGTCTGGCGCTGCTCGGCACCATCGGCGGGAGTCTGTTTCAAGCAGTGCATCAGGCCAGTGAGCGCGA
TGCGGCGGTGTTAACCTTCCTGGTCACCGCCAGCGGGGTGACGCTGGCGGGAATTGGCTCCGCCTTCTGGGGCGTGGTGC
TCGGCGGGGTGAGTTACGGCGTGCTATCCGCGCTGCGCCGCCCGTAG

Upstream 100 bases:

>100_bases
GCGAGTTTTTCTCCCAGGGTAGCTGCGCGAACCACCGCTTGTGCGCTATAACGCACAATGATACATTGAATGGATGTTAT
AACGCACATGAGAATCATCT

Downstream 100 bases:

>100_bases
CTGGGAGGGCGTCAGGCGGTGGCGGCTTTGACCCGATGGCTGAAATGGCTGGGGGAGCTAAAACCACAGGCCAGCGCTAT
CTCGGTTAACGGCAGCGCGC

Product: MFS superfamily benzoate transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MRSFSLPLPTLFAGFVAVLVGYASSAAIIWQAAAAAGATPGQIAGWMTALGLAMGISTLALSAWRKVPVLTAWSTPGAAL
LVSGLQGVTLAEAVGIFIFANALIVICGATGLFARLMQIIPHSLAAAMLAGILLRFGLQAFAGLQDHLPLCGGMLAAWLL
CKALCPRFAVVAALVIGALIAAASGDVASAAVPLAFVTPEWVAPQFTPALLLSVGLPFFLVTMASQNAPGFATLQASGYT
VPVSALIVVCGGLALLLAPFGVYSICIAAITAAICQSPEAHPDPNQRWLAAIAAGGFYLLAGLFGGSITALMSALPPAWI
QMLAGLALLGTIGGSLFQAVHQASERDAAVLTFLVTASGVTLAGIGSAFWGVVLGGVSYGVLSALRRP

Sequences:

>Translated_388_residues
MRSFSLPLPTLFAGFVAVLVGYASSAAIIWQAAAAAGATPGQIAGWMTALGLAMGISTLALSAWRKVPVLTAWSTPGAAL
LVSGLQGVTLAEAVGIFIFANALIVICGATGLFARLMQIIPHSLAAAMLAGILLRFGLQAFAGLQDHLPLCGGMLAAWLL
CKALCPRFAVVAALVIGALIAAASGDVASAAVPLAFVTPEWVAPQFTPALLLSVGLPFFLVTMASQNAPGFATLQASGYT
VPVSALIVVCGGLALLLAPFGVYSICIAAITAAICQSPEAHPDPNQRWLAAIAAGGFYLLAGLFGGSITALMSALPPAWI
QMLAGLALLGTIGGSLFQAVHQASERDAAVLTFLVTASGVTLAGIGSAFWGVVLGGVSYGVLSALRRP
>Mature_388_residues
MRSFSLPLPTLFAGFVAVLVGYASSAAIIWQAAAAAGATPGQIAGWMTALGLAMGISTLALSAWRKVPVLTAWSTPGAAL
LVSGLQGVTLAEAVGIFIFANALIVICGATGLFARLMQIIPHSLAAAMLAGILLRFGLQAFAGLQDHLPLCGGMLAAWLL
CKALCPRFAVVAALVIGALIAAASGDVASAAVPLAFVTPEWVAPQFTPALLLSVGLPFFLVTMASQNAPGFATLQASGYT
VPVSALIVVCGGLALLLAPFGVYSICIAAITAAICQSPEAHPDPNQRWLAAIAAGGFYLLAGLFGGSITALMSALPPAWI
QMLAGLALLGTIGGSLFQAVHQASERDAAVLTFLVTASGVTLAGIGSAFWGVVLGGVSYGVLSALRRP

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=383, Percent_Identity=70.4960835509138, Blast_Score=518, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 39136; Mature: 39136

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSFSLPLPTLFAGFVAVLVGYASSAAIIWQAAAAAGATPGQIAGWMTALGLAMGISTLA
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LSAWRKVPVLTAWSTPGAALLVSGLQGVTLAEAVGIFIFANALIVICGATGLFARLMQII
HHHHHCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
PHSLAAAMLAGILLRFGLQAFAGLQDHLPLCGGMLAAWLLCKALCPRFAVVAALVIGALI
HHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAASGDVASAAVPLAFVTPEWVAPQFTPALLLSVGLPFFLVTMASQNAPGFATLQASGYT
HHCCCCHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
VPVSALIVVCGGLALLLAPFGVYSICIAAITAAICQSPEAHPDPNQRWLAAIAAGGFYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AGLFGGSITALMSALPPAWIQMLAGLALLGTIGGSLFQAVHQASERDAAVLTFLVTASGV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
TLAGIGSAFWGVVLGGVSYGVLSALRRP
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSFSLPLPTLFAGFVAVLVGYASSAAIIWQAAAAAGATPGQIAGWMTALGLAMGISTLA
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LSAWRKVPVLTAWSTPGAALLVSGLQGVTLAEAVGIFIFANALIVICGATGLFARLMQII
HHHHHCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
PHSLAAAMLAGILLRFGLQAFAGLQDHLPLCGGMLAAWLLCKALCPRFAVVAALVIGALI
HHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAASGDVASAAVPLAFVTPEWVAPQFTPALLLSVGLPFFLVTMASQNAPGFATLQASGYT
HHCCCCHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
VPVSALIVVCGGLALLLAPFGVYSICIAAITAAICQSPEAHPDPNQRWLAAIAAGGFYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AGLFGGSITALMSALPPAWIQMLAGLALLGTIGGSLFQAVHQASERDAAVLTFLVTASGV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
TLAGIGSAFWGVVLGGVSYGVLSALRRP
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]