Click here to switch to the map view.

The map label for this gene is pecT [H]

Identifier: 152970356

GI number: 152970356

Start: 1991919

End: 1992812

Strand: Direct

Name: pecT [H]

Synonym: KPN_01804

Alternate gene names: 152970356

Gene position: 1991919-1992812 (Clockwise)

Preceding gene: 152970355

Following gene: 152970361

Centisome position: 37.48

GC content: 65.32

Gene sequence:

>894_bases
ATGGGGATGATGATGGAGAAACGCTTACCAGGGCTGGATCTCGACGCCCTGCGCAGCTTTGTGACCGGCATGGAGTGCGG
CAGTTTCGCCCAGGCAGCGCTGCGCCTGTCGCGTTCCACCTCCGCGGTCAGCGCCCAGCTTAAAAAGCTGGAGAGTCAGT
GCGGTGCGGCGCTGGTGACCAAACAGGGGCGCCATCTGGTGCTCACCGCGGAAGGCGAAAAGCTGATGAGCTACGCCAGA
CGCCTGCTGGCGCTCAATGATGAAACCCTGCGCGCGCTGCAGGGTGAGCGGCTCACCGGCGAGATCCACCTTGGTATGCA
GGAAGATTTTGGCGAATCGCTGATGCCGGAGATCCTCGGGCAATTTAAACGGCATCATCCGCAGGTGCGGATAGTCGCCA
GGGTGGATCGCAATGGTCCGCTGCGCCAGGCGCTGGCGGAAGAGGCGCTGGATCTGGCGCTGCTGTGGCAAACCGAAGAT
CAGGGTTCCGGGCTGGGCCTCTGCCCGCTGGCGTGGATTGCGCATCCTGACCTGGATATTCGCGCTCTGCTGGTCTCCGG
CGAGCCGCTGCCGCTGGTGATGTTCGACAGCCCGTGCCTGATGCACTCCCGCGCCATTGCCTGTCTCGATGCCGCGGGGA
TCCCCTGGCAGGTGGTGTTCGTCAGCCACAGCCTGAGCGGCATCTGGGCGGCGGTGCAGGCCGGGCTGGGCCTGACGATA
CGCACCCGCATCGGCATGCCAGGCAACCTGCGCCCTGCAGGAGGACTGCTGCCAGCGCCAGGAAGTCTGGCCGTCAGCCT
GCGACAAACCCCGCGTGAGGAACACCATTCCGCCGCCGTGGCGCTGCTCGGCGAACTGATGACCGAGGCCCTGCAGGGAT
GGCTCGACAGGTGA

Upstream 100 bases:

>100_bases
CACCGCTAATGCTCTCTTCGCAGGGCCCGTTGACCCCTGCCCCTCGCGATGCCACAGTACTATCCCGAAAATAACAACGT
TCAGGATAAACGTCCTGAAA

Downstream 100 bases:

>100_bases
CAGTGTCACGCCATTTCATTCACCCTCACCCTAACCCTCTCCCTGAAGGGAGAGGGAACCGTTCGGCAGCCACCGACAAT
GAGCATCCAGCGCCTCTCCC

Product: LysR family NADH dehydrogenase transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MGMMMEKRLPGLDLDALRSFVTGMECGSFAQAALRLSRSTSAVSAQLKKLESQCGAALVTKQGRHLVLTAEGEKLMSYAR
RLLALNDETLRALQGERLTGEIHLGMQEDFGESLMPEILGQFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTED
QGSGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFDSPCLMHSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTI
RTRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREEHHSAAVALLGELMTEALQGWLDR

Sequences:

>Translated_297_residues
MGMMMEKRLPGLDLDALRSFVTGMECGSFAQAALRLSRSTSAVSAQLKKLESQCGAALVTKQGRHLVLTAEGEKLMSYAR
RLLALNDETLRALQGERLTGEIHLGMQEDFGESLMPEILGQFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTED
QGSGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFDSPCLMHSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTI
RTRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREEHHSAAVALLGELMTEALQGWLDR
>Mature_296_residues
GMMMEKRLPGLDLDALRSFVTGMECGSFAQAALRLSRSTSAVSAQLKKLESQCGAALVTKQGRHLVLTAEGEKLMSYARR
LLALNDETLRALQGERLTGEIHLGMQEDFGESLMPEILGQFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTEDQ
GSGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFDSPCLMHSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTIR
TRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREEHHSAAVALLGELMTEALQGWLDR

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=33.4630350194552, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787806, Length=144, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=31.8181818181818, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=124, Percent_Identity=31.4516129032258, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082132, Length=263, Percent_Identity=24.7148288973384, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI48994962, Length=144, Percent_Identity=28.4722222222222, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI2367136, Length=130, Percent_Identity=33.0769230769231, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1787601, Length=123, Percent_Identity=30.8943089430894, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32138; Mature: 32007

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMMMEKRLPGLDLDALRSFVTGMECGSFAQAALRLSRSTSAVSAQLKKLESQCGAALVT
CCCCCHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCEEEEE
KQGRHLVLTAEGEKLMSYARRLLALNDETLRALQGERLTGEIHLGMQEDFGESLMPEILG
CCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
QFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTEDQGSGLGLCPLAWIAHPDLDI
HHHHCCCCEEEEEEECCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHCCCCCCE
RALLVSGEPLPLVMFDSPCLMHSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTI
EEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCEEE
RTRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREEHHSAAVALLGELMTEALQGWLDR
EEECCCCCCCCCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GMMMEKRLPGLDLDALRSFVTGMECGSFAQAALRLSRSTSAVSAQLKKLESQCGAALVT
CCCCHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCEEEEE
KQGRHLVLTAEGEKLMSYARRLLALNDETLRALQGERLTGEIHLGMQEDFGESLMPEILG
CCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
QFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTEDQGSGLGLCPLAWIAHPDLDI
HHHHCCCCEEEEEEECCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHCCCCCCE
RALLVSGEPLPLVMFDSPCLMHSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTI
EEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCEEE
RTRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREEHHSAAVALLGELMTEALQGWLDR
EEECCCCCCCCCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]