Click here to switch to the map view.

The map label for this gene is ydgC [H]

Identifier: 152970074

GI number: 152970074

Start: 1691893

End: 1692228

Strand: Direct

Name: ydgC [H]

Synonym: KPN_01522

Alternate gene names: 152970074

Gene position: 1691893-1692228 (Clockwise)

Preceding gene: 152970069

Following gene: 152970078

Centisome position: 31.83

GC content: 58.93

Gene sequence:

>336_bases
ATGGGGCTGTTAATCAAAGGGCTGCTGGGAGCGCTGGTGGTGGTGCTGATTGGCGTGCTGGCGAAAACCAAAAACTACGC
TATCGCTGGCCTGGTCCCGCTGTTTCCCACCTTTGCGCTCATCGCCCATTATATTGTCGCCAGCGAGCGGGGGATCGAAG
CCCTGCGCGCGACCATCGTATTCGGCATGTGGTCGATTCTTCCCTATTTTATCTATCTGCTGTCACTGTGGTATTTCACC
GGGATCATGCGCCTGCCGTTGGCGCTGGCAGGCGCGGTGGGATGCTGGGGGCTGTGCGCCTGGCTGTTAATCCTCGGCTG
GAGCCGTTTCCACTAG

Upstream 100 bases:

>100_bases
CATACACCGCACTTATTTTACCCGCCATTACTCTTTTATAAACAGCGTTAAATCCGCTATGCTGCCCTAACTTATTGATT
CACTGTTAAGGCATACGGGC

Downstream 100 bases:

>100_bases
CGCAGCGGGCGGCCGCCGTCGACAGCGAATGAGCGGCCGGTAACGTAGCGGCTGGTAAACAGGTAATCGATGAGATCGCT
AATCTCTTTTTCGCCAGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MGLLIKGLLGALVVVLIGVLAKTKNYAIAGLVPLFPTFALIAHYIVASERGIEALRATIVFGMWSILPYFIYLLSLWYFT
GIMRLPLALAGAVGCWGLCAWLLILGWSRFH

Sequences:

>Translated_111_residues
MGLLIKGLLGALVVVLIGVLAKTKNYAIAGLVPLFPTFALIAHYIVASERGIEALRATIVFGMWSILPYFIYLLSLWYFT
GIMRLPLALAGAVGCWGLCAWLLILGWSRFH
>Mature_110_residues
GLLIKGLLGALVVVLIGVLAKTKNYAIAGLVPLFPTFALIAHYIVASERGIEALRATIVFGMWSILPYFIYLLSLWYFTG
IMRLPLALAGAVGCWGLCAWLLILGWSRFH

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=111, Percent_Identity=77.4774774774775, Blast_Score=177, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 12181; Mature: 12050

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLIKGLLGALVVVLIGVLAKTKNYAIAGLVPLFPTFALIAHYIVASERGIEALRATIV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGMWSILPYFIYLLSLWYFTGIMRLPLALAGAVGCWGLCAWLLILGWSRFH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLLIKGLLGALVVVLIGVLAKTKNYAIAGLVPLFPTFALIAHYIVASERGIEALRATIV
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGMWSILPYFIYLLSLWYFTGIMRLPLALAGAVGCWGLCAWLLILGWSRFH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]