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The map label for this gene is yhjC [H]

Identifier: 152969908

GI number: 152969908

Start: 1521433

End: 1522338

Strand: Direct

Name: yhjC [H]

Synonym: KPN_01355

Alternate gene names: 152969908

Gene position: 1521433-1522338 (Clockwise)

Preceding gene: 152969906

Following gene: 152969910

Centisome position: 28.62

GC content: 64.57

Gene sequence:

>906_bases
ATGGACAAACTGGATGCCATGCAGGTCTATGTTGCGGTCGTGGATGCCCACAGCTTCGCCCGCGCGGCGGAGGTGCTCGG
GCAGCCGCGCTCCACGGTATCGCGGGTGGTGAAGGAGCTGGAAGCCTGGCTCGGGGCGCAGCTTCTCCAGCGCACCACCC
GCAAGCTCAGCGTGACGGCGGAGGGTCGCCGGTATTATGAGGAGTGTAAAAGGCTGCTGGCCGAGATGGCGGCGATGGAA
GCCTCCTTTCCTGGGCGCTCGGCTCAGCCCGCCGGGCGGTTCAAGGTAGGGATGCCGCAATCCCTTGCCCGCCACTGCAT
TCTGCCGAGGATCGGCGAGTTTTTGCAGCAGTATCCCGATCTGGAGTTGATCCTCTGCTCAAGCGACAACGTGGAAGATA
TTATTCAGGAGGGATTCGACTGCGTGATCCGTACCGGGCGGATCGAAGATTCCACCACCCTGGTGGCGCGTCCTCTGGCC
CGCTACCGCTGGATGGTCCTCGCCTCGCCGGCCTGGCTCGCGGCCCACGGCCGGCCGCAGAGCATCGACGAACTGCACCA
GCATCGGGCGGTGGGCTACCTGAATCACCGTACCGGGCGGACCATCGACTGGCTTTTCTCCCTCGATGAAGGCGACTGCG
CGATCCGCATGCGGGAGACGCTGGTGGTCGACGATACCGATGCCTACATTCAGGCCGGCATTCAGGGGCTGGGCCTGATC
CGCGTCGCCAGCTATCTGGCGCAACCTTATCTGCAGAGCGGGGCGCTGGTCGCCTGTCTGGAGCAGGCCGCTTCTGATCT
TCCCTTGTCGCTGGTCTATCCGCAAAACCGCTATCTGCCGCCGGCGGTGCGCGCGTTTTATGACTGGAGCAGGCGCGTGC
TGCAACCCCCGCACAGCGAGGCCTGA

Upstream 100 bases:

>100_bases
TACAGGTTCAGTGTAGGGGGACGGTCGACATTCGATAAGTACAGCGTTTCGGGTTAGACTGTTCGTAATAATGGGATAAT
GAGCGCCGGGGGGTAACGAA

Downstream 100 bases:

>100_bases
TGCCGGGGCATCGGCCCGGTTATTGGCCGCGCATGGCCTGTTTTAACTTCGTCACCAGCCAGTTCAGCGCCGGATCCTGC
GCCCGCCGTTTGTGCCGCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDKLDAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRRYYEECKRLLAEMAAME
ASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLA
RYRWMVLASPAWLAAHGRPQSIDELHQHRAVGYLNHRTGRTIDWLFSLDEGDCAIRMRETLVVDDTDAYIQAGIQGLGLI
RVASYLAQPYLQSGALVACLEQAASDLPLSLVYPQNRYLPPAVRAFYDWSRRVLQPPHSEA

Sequences:

>Translated_301_residues
MDKLDAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRRYYEECKRLLAEMAAME
ASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLA
RYRWMVLASPAWLAAHGRPQSIDELHQHRAVGYLNHRTGRTIDWLFSLDEGDCAIRMRETLVVDDTDAYIQAGIQGLGLI
RVASYLAQPYLQSGALVACLEQAASDLPLSLVYPQNRYLPPAVRAFYDWSRRVLQPPHSEA
>Mature_301_residues
MDKLDAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRRYYEECKRLLAEMAAME
ASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLA
RYRWMVLASPAWLAAHGRPQSIDELHQHRAVGYLNHRTGRTIDWLFSLDEGDCAIRMRETLVVDDTDAYIQAGIQGLGLI
RVASYLAQPYLQSGALVACLEQAASDLPLSLVYPQNRYLPPAVRAFYDWSRRVLQPPHSEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=36.8243243243243, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=33.4494773519164, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=27.4647887323944, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=25.7950530035336, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1789639, Length=193, Percent_Identity=31.6062176165803, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=25.4237288135593, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI87081978, Length=259, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=28.2352941176471, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=25.6055363321799, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788481, Length=302, Percent_Identity=24.5033112582781, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788748, Length=174, Percent_Identity=30.4597701149425, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=24.7524752475248, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=26.027397260274, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33769; Mature: 33769

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLDAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEH
EGRRYYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCC
LELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQ
CEEEEECCCCHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHEEECCHHEECCCCCC
SIDELHQHRAVGYLNHRTGRTIDWLFSLDEGDCAIRMRETLVVDDTDAYIQAGIQGLGLI
CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH
RVASYLAQPYLQSGALVACLEQAASDLPLSLVYPQNRYLPPAVRAFYDWSRRVLQPPHSE
HHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC
A
C
>Mature Secondary Structure
MDKLDAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEH
EGRRYYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCC
LELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQ
CEEEEECCCCHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHEEECCHHEECCCCCC
SIDELHQHRAVGYLNHRTGRTIDWLFSLDEGDCAIRMRETLVVDDTDAYIQAGIQGLGLI
CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH
RVASYLAQPYLQSGALVACLEQAASDLPLSLVYPQNRYLPPAVRAFYDWSRRVLQPPHSE
HHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]