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The map label for this gene is oprF [H]

Identifier: 152969879

GI number: 152969879

Start: 1487692

End: 1489398

Strand: Direct

Name: oprF [H]

Synonym: KPN_01326

Alternate gene names: 152969879

Gene position: 1487692-1489398 (Clockwise)

Preceding gene: 152969878

Following gene: 152969880

Centisome position: 27.99

GC content: 65.08

Gene sequence:

>1707_bases
ATGAGCCCCGCGCAGCAGCGTGGGCTGGCGCTGTGGGCCAGTCTGCTGAGTGCGCTGGTGTGCCTGCTATTTTTGCCGGT
TCCCCGCTGGGGGGCGTGGCTCATTCTGCTGGTCACGCTGGCCCTGATCATCGGGATCTGGCGCATCGCCAGTCGTCGTA
CCGGACGTAACGTCGCATCAACCCTGGCCCCTCTCCCGGAGGGCGCTTATCGCCAGCCGGTGGTCCTCGTTTGCGGCGAC
CTGCCGTGTGTCTGGCCGCCAGCGTCACCGGTGCGAGTCGTCAAACAGGGCTGCTGGATCCGCGTGGAAAAGACGGAGGA
GCTGCAGCAGGTCGCGCGCCAGGTATTGAGCCAGCGGCCGGAATGGGGGCCTCAGCTGTCGGTGCTGCTCTGCGTCTGCC
CGCAGCGGCATGCGCAAAGCGATGCGCTGACCAGCGCTCTGCTGGCCCTGCGCTGGCAACTCAGCCAGCTGCGCCAGCAG
ACGGGGTATGCCGTACCGCTGGCGCTGCAGGGGCAGGTGGGCAGCGCGATGAGTCGCGACCTGTTGTGGCAGGCGGCGAT
ACCGGGTGAAGCGGTGAAAGTCTGGCAGCCCTCCTGCGCCCCCTGTTCCGTACCGGCCTGGGTAAGCGCCGGCGGGGCGG
CCGCGCTGGAGCAGCAGGTGCTGATGAACAGCCTGATGGGCTGGTTTGAACAGCACGTCCATGCCGTGTTGACGGAAGAG
AATATCGACCTGCCGCCTCTGACCCCAGCGGCCGTGCTGTGGGGCCTCGGGCCCTCGCTGCCTGGAAGTCTGGCGTCGTC
GGCCTGGACGACGTGGTTATCCCGACATAGCGGCCTGTCGCGGGTAGCTGGCTGGCAGCCAGATGAGAGCGACACCGGGG
ACGCTTCAGCTTTGCCGGAATTCATCCTGCCGCAGTTACCGGCGGGACGGGGACTCACGCCACGAGGCAGGGCCTGGCGC
GCGGCGCTCGCGATTTTCACCCTCGCGGCTGTCGCCGCGCTGCTCAGCAGTGGCTGGAACAATCGACAACTGCTGCAGCG
CGTGGGCGTCGATATTGCGCGTTATGAGCGGATTGCGATGGATGATTATCGACCAAAAGCCAGCGCTGTCAGGGTGCTGC
GTGAAGATGCCGCGCTGCTTGATAGCTGGGCGCGTAACGGCGTCCCGCTGCGCCTGAGTCTGGGCTTGTATCGCGGGGAG
CAGATTCGCCTGCCGTTGCTGGAGGCGATTCGCGGTTACGTGCCGCCTCCGCCTCCGCCCAGGCCGGTGCAGCGCGTTGC
CCCGAACGTCATCCGCCTTGACAGCATGTCGCTATTCGATACCGGGAAATGGGTACTGAAGCCTGGTTCGACAAAGCGGC
TGGTCAACTCGCTGATGGACATTAAGGCCAGGCCCGGGTGGCTGATCGTGGTGGCGGGTCACACCGACAGCGTGGGTGAG
GAAAAAGCCAACCAGCTATTGTCGCTGAAACGTGCGGAATCGGTCCGCGACTGGATGCGCGATACCGGCGACGTGCCGGA
CAGCTGCTTTGCCGTTCAGGGCTATGGCGAAAGCCGACCAATTGCAACAAACGATACGCCGGAAGGCCGTGCGCTGAACC
GTCGTGTCGAAATCAGTCTGGTGCCGCAGGTAGACGCCTGCCGGTTACCGGACCAACCCTCTGCGTCATCCCAGGATGAT
GGCGCTTCACTACACAATGGAGAGTAA

Upstream 100 bases:

>100_bases
TACGTATTGGCCTGAGCGTGGTGGTGGTACTCGCCCTGTGGTGGGGACTCAACCACTGGCTCGATCACCTGCTGCTGACC
TTGTTACCGGGGGAGGTGAA

Downstream 100 bases:

>100_bases
TTCCATGGCAATTCCTGTTTATCTTTGGCTGAAAGACGACGGCGGCGCGGACATTAAAGGGTCTGTCGACGTTCAGGATC
GTGAAGGCAGTATCGAAGTG

Product: putative outer membrane protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 568; Mature: 567

Protein sequence:

>568_residues
MSPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVASTLAPLPEGAYRQPVVLVCGD
LPCVWPPASPVRVVKQGCWIRVEKTEELQQVARQVLSQRPEWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQ
TGYAVPLALQGQVGSAMSRDLLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEE
NIDLPPLTPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPDESDTGDASALPEFILPQLPAGRGLTPRGRAWR
AALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAMDDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYRGE
QIRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRLDSMSLFDTGKWVLKPGSTKRLVNSLMDIKARPGWLIVVAGHTDSVGE
EKANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQVDACRLPDQPSASSQDD
GASLHNGE

Sequences:

>Translated_568_residues
MSPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVASTLAPLPEGAYRQPVVLVCGD
LPCVWPPASPVRVVKQGCWIRVEKTEELQQVARQVLSQRPEWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQ
TGYAVPLALQGQVGSAMSRDLLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEE
NIDLPPLTPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPDESDTGDASALPEFILPQLPAGRGLTPRGRAWR
AALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAMDDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYRGE
QIRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRLDSMSLFDTGKWVLKPGSTKRLVNSLMDIKARPGWLIVVAGHTDSVGE
EKANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQVDACRLPDQPSASSQDD
GASLHNGE
>Mature_567_residues
SPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVASTLAPLPEGAYRQPVVLVCGDL
PCVWPPASPVRVVKQGCWIRVEKTEELQQVARQVLSQRPEWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQT
GYAVPLALQGQVGSAMSRDLLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEEN
IDLPPLTPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPDESDTGDASALPEFILPQLPAGRGLTPRGRAWRA
ALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAMDDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYRGEQ
IRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRLDSMSLFDTGKWVLKPGSTKRLVNSLMDIKARPGWLIVVAGHTDSVGEE
KANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQVDACRLPDQPSASSQDDG
ASLHNGE

Specific function: Known to stabilize the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=121, Percent_Identity=39.6694214876033, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788957, Length=69, Percent_Identity=47.8260869565217, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 61869; Mature: 61738

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVAS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLAPLPEGAYRQPVVLVCGDLPCVWPPASPVRVVKQGCWIRVEKTEELQQVARQVLSQRP
HHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHCCC
EWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQTGYAVPLALQGQVGSAMSRD
CCCCCCEEEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
LLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEE
HHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NIDLPPLTPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPDESDTGDASALPE
CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCHH
FILPQLPAGRGLTPRGRAWRAALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAM
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
DDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYRGEQIRLPLLEAIRGYVPPPPPP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCHHHHHHHCCCCCCCCC
RPVQRVAPNVIRLDSMSLFDTGKWVLKPGSTKRLVNSLMDIKARPGWLIVVAGHTDSVGE
CCHHHHCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCH
EKANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
VPQVDACRLPDQPSASSQDDGASLHNGE
CCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVAS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLAPLPEGAYRQPVVLVCGDLPCVWPPASPVRVVKQGCWIRVEKTEELQQVARQVLSQRP
HHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHCCC
EWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQTGYAVPLALQGQVGSAMSRD
CCCCCCEEEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
LLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEE
HHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NIDLPPLTPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPDESDTGDASALPE
CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCHH
FILPQLPAGRGLTPRGRAWRAALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAM
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
DDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYRGEQIRLPLLEAIRGYVPPPPPP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCHHHHHHHCCCCCCCCC
RPVQRVAPNVIRLDSMSLFDTGKWVLKPGSTKRLVNSLMDIKARPGWLIVVAGHTDSVGE
CCHHHHCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCH
EKANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
VPQVDACRLPDQPSASSQDDGASLHNGE
CCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]