Click here to switch to the map view.

The map label for this gene is pspD [H]

Identifier: 152969854

GI number: 152969854

Start: 1459230

End: 1459448

Strand: Direct

Name: pspD [H]

Synonym: KPN_01300

Alternate gene names: 152969854

Gene position: 1459230-1459448 (Clockwise)

Preceding gene: 152969853

Following gene: 152969855

Centisome position: 27.45

GC content: 65.75

Gene sequence:

>219_bases
ATGAATAGCAAATGGCAACGCGCCGGGCAGCAGGTGAAGCCCGGTCTGAAAATCGTCGGTAAGCTGGCGCTGCTGACCGC
GCTGCGTTATGGCCCGGCGGGCGTTGCCGGCTGGGCGGTTAAATCGGTCGCGCGTCGGCCGCTGAAAATGCTGCTGGCGG
TGGCGCTGGAGCCGCTGCTCAGCCGGCTGGCCAACCGCGTCACGCGCGGGATGAAATAA

Upstream 100 bases:

>100_bases
CGTCTGCGTGAAATGGAGCGGTATGTGACCTCCGACACCTTTACGCTGCGCAGCCGCTTTCGCCAGCTGTAAACCCTGTT
TCTAACGAATGAGGCAACGC

Downstream 100 bases:

>100_bases
TGCCGCCGTGGGGAAGGCGCAAAAGGATTAACGTTGTCCTGCTTATCCCCGGCAGATCGCTTATGATGACGAGACATACC
TTCAGGGCATAACGGACTGG

Product: peripheral inner membrane phage-shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MNSKWQRAGQQVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGMK

Sequences:

>Translated_72_residues
MNSKWQRAGQQVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGMK
>Mature_72_residues
MNSKWQRAGQQVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGMK

Specific function: The phage shock protein (psp) operon (pspABCDE) may play a significant role in the competition for survival under nutrient- or energy-limited conditions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspD family [H]

Homologues:

Organism=Escherichia coli, GI1787565, Length=72, Percent_Identity=77.7777777777778, Blast_Score=114, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014321 [H]

Pfam domain/function: PF09584 Phageshock_PspD [H]

EC number: NA

Molecular weight: Translated: 7807; Mature: 7807

Theoretical pI: Translated: 12.65; Mature: 12.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKWQRAGQQVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLL
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRLANRVTRGMK
HHHHHHHHCCCC
>Mature Secondary Structure
MNSKWQRAGQQVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLL
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRLANRVTRGMK
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]