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The map label for this gene is yciD [H]

Identifier: 152969802

GI number: 152969802

Start: 1399447

End: 1400121

Strand: Direct

Name: yciD [H]

Synonym: KPN_01248

Alternate gene names: 152969802

Gene position: 1399447-1400121 (Clockwise)

Preceding gene: 152969796

Following gene: 152969806

Centisome position: 26.33

GC content: 57.33

Gene sequence:

>675_bases
TTGGCCGCGCTGAAAAACCATAATGAGGAAGTGGATATGAAGAAGTTAGCAGCGGCGGCATTGATTCTTGGCACGCTTTC
TACCGGCAGCGTCTGGGCGCATGAGGCGGGGGAGTTTTTCATTCGTGCCGGGACCGCCACCGTCCGACCGACGGAGGGCT
CTGACAATGTGTTAGGCAGCCTTGGCAGTTTCAACGTCAGTAACAATACCCAGCTGGGTTTAACCTTTACCTATATGGCG
ACCGATAACATTGGCGTGGAGTTGCTTGCCGCGACGCCGTTCCGCCATAAGGTCGGCACCGGGCCAACCGGGACTATCGC
CACCGTCCATCAGCTGCCGCCCACCCTGATGGCGCAGTGGTACTTTGGCGATGCGCAAAGCAAGGTGCGCCCGTACGTGG
GGGCCGGTATCAACTACACCACCTTCTTTAATGAAGACTTTAACGACACCGGCAAGGCGGCCGGGCTTTCCGATCTGAGC
CTGAAGGACTCCTGGGGCGCGGCGGGGCAGGTCGGCCTCGATTATCTGATTAACCGCGACTGGCTGCTGAATATGTCGGT
GTGGTACATGGATATCGATACCGATGTGAAATTCAAAGCCGGCGGCGTGGACCAGAAAGTCAGCACCCGTCTGGATCCGT
GGGTGTTTATGTTCTCCGCAGGCTATCGGTTCTAA

Upstream 100 bases:

>100_bases
ATTGCGATCGGTAGCAAAAATTAATCTGGATCAATAAATGTTAAATCTGAGGACTTAGTGTGATCTAAAACAGATCAAAC
GTAACTCGTTATAGGTATAT

Downstream 100 bases:

>100_bases
ATTCTTCTGTAAACTGGCCAACGGACGGCCAGTTCATTGTCTCGTCACACCTGTCTGCCGCAAGCCTCTGTCATCAACAG
CGGATCACACTTCCGTCCAC

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAALKNHNEEVDMKKLAAAALILGTLSTGSVWAHEAGEFFIRAGTATVRPTEGSDNVLGSLGSFNVSNNTQLGLTFTYMA
TDNIGVELLAATPFRHKVGTGPTGTIATVHQLPPTLMAQWYFGDAQSKVRPYVGAGINYTTFFNEDFNDTGKAAGLSDLS
LKDSWGAAGQVGLDYLINRDWLLNMSVWYMDIDTDVKFKAGGVDQKVSTRLDPWVFMFSAGYRF

Sequences:

>Translated_224_residues
MAALKNHNEEVDMKKLAAAALILGTLSTGSVWAHEAGEFFIRAGTATVRPTEGSDNVLGSLGSFNVSNNTQLGLTFTYMA
TDNIGVELLAATPFRHKVGTGPTGTIATVHQLPPTLMAQWYFGDAQSKVRPYVGAGINYTTFFNEDFNDTGKAAGLSDLS
LKDSWGAAGQVGLDYLINRDWLLNMSVWYMDIDTDVKFKAGGVDQKVSTRLDPWVFMFSAGYRF
>Mature_223_residues
AALKNHNEEVDMKKLAAAALILGTLSTGSVWAHEAGEFFIRAGTATVRPTEGSDNVLGSLGSFNVSNNTQLGLTFTYMAT
DNIGVELLAATPFRHKVGTGPTGTIATVHQLPPTLMAQWYFGDAQSKVRPYVGAGINYTTFFNEDFNDTGKAAGLSDLSL
KDSWGAAGQVGLDYLINRDWLLNMSVWYMDIDTDVKFKAGGVDQKVSTRLDPWVFMFSAGYRF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=212, Percent_Identity=80.188679245283, Blast_Score=352, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 24337; Mature: 24205

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALKNHNEEVDMKKLAAAALILGTLSTGSVWAHEAGEFFIRAGTATVRPTEGSDNVLGS
CCCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEECCCCEEEEECCEEEECCCCCCHHHCC
LGSFNVSNNTQLGLTFTYMATDNIGVELLAATPFRHKVGTGPTGTIATVHQLPPTLMAQW
CCCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCEEEE
YFGDAQSKVRPYVGAGINYTTFFNEDFNDTGKAAGLSDLSLKDSWGAAGQVGLDYLINRD
EECCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
WLLNMSVWYMDIDTDVKFKAGGVDQKVSTRLDPWVFMFSAGYRF
EEEEEEEEEEEECCCEEEEECCCCCHHHHCCCCEEEEEECCCCC
>Mature Secondary Structure 
AALKNHNEEVDMKKLAAAALILGTLSTGSVWAHEAGEFFIRAGTATVRPTEGSDNVLGS
CCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEECCCCEEEEECCEEEECCCCCCHHHCC
LGSFNVSNNTQLGLTFTYMATDNIGVELLAATPFRHKVGTGPTGTIATVHQLPPTLMAQW
CCCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCEEEE
YFGDAQSKVRPYVGAGINYTTFFNEDFNDTGKAAGLSDLSLKDSWGAAGQVGLDYLINRD
EECCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
WLLNMSVWYMDIDTDVKFKAGGVDQKVSTRLDPWVFMFSAGYRF
EEEEEEEEEEEECCCEEEEECCCCCHHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]