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The map label for this gene is ybfI [H]

Identifier: 152969691

GI number: 152969691

Start: 1293090

End: 1293896

Strand: Direct

Name: ybfI [H]

Synonym: KPN_01137

Alternate gene names: 152969691

Gene position: 1293090-1293896 (Clockwise)

Preceding gene: 152969687

Following gene: 152969692

Centisome position: 24.33

GC content: 64.06

Gene sequence:

>807_bases
ATGTCTCAGCAGCAGAGCGCGGACTGGGTCAGGCTGGCGCAATCGCCCAGCCGGACGGAACGCATCGAAGCCTTCTTCGG
CGGCCACGGCTACGAACCGCACCGGCATGATACCTACGCCATCGGCCAGACGATCGCCGGCGTGCAGAGCTTTCACTATC
GCGGCGGACTCCAGCACAGCCTGCCCGGCGGAACGATGGTGCTTCATCCGGACGAAATACACGATGGCGAGGCGGGCACC
GAGGCGGGGTTTCACTACCGTATGGTTTATATCGAACCGGCGCTGATCCAGAAGATACTCGGCGGCAGGCCGCTACCGTT
TATCCCCGACGGCTTGTCGGCGGATCCACGGCTACGTCACGCCGCGCAGCCGCTGTTGAAAGCGGTCACGGATACCTTCG
AGCCGCTGGAGGAAGAGGATGCTCTGTACGACCTGGCGCAGACCCTGGCCGTTGTCGGCGGCCAACGTTCCCGTCGCCAG
GCGTTTGATTATCAGGCGGCGGAGAGGGCCCGGGAGTATATTCATGCCTGTTTTATGCAGGATATGACCCTCGACACCCT
GTCGCAGGTCAGCGGCCGGGACCGCTGGAGCCTGAGCCGGGATTTCAGAACGCTGTACGGCACCAGCCCGTGGCGTTACG
TCATGATGCGTCGGCTCGATTTTTGCCGCCAGCGGATGCGCGCCGGGGAACGTCTGGTGGATATTGCCGCCGACGCGGGC
TTTGCCGACCAGAGCCACATGACGCGCCAGTTTATCAGCCGCTTTGGTCTCTCTCCGGGCCGCTGGCTGCGGGCGATCCG
CGGCTAG

Upstream 100 bases:

>100_bases
CGCCCAGCGGCAGGATGCGAACGGCGAGCGGGTTGGTGATGTTAATTTTTTGTGTAATAGTGCTGGAATCACCCCTCAAG
AACGTCGCAGGTTATCCATT

Downstream 100 bases:

>100_bases
CGCGGTTCAGGTTGCACAATCGTTCAAGCGTGACCGCGGCGAGGCGAACTATGCTGACTGCCTTTATCACAAGGAGACAG
CCCATGTATCAACTCGTTAA

Product: putative helix-turn-helix, AraC type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSQQQSADWVRLAQSPSRTERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQHSLPGGTMVLHPDEIHDGEAGT
EAGFHYRMVYIEPALIQKILGGRPLPFIPDGLSADPRLRHAAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQ
AFDYQAAERAREYIHACFMQDMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADAG
FADQSHMTRQFISRFGLSPGRWLRAIRG

Sequences:

>Translated_268_residues
MSQQQSADWVRLAQSPSRTERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQHSLPGGTMVLHPDEIHDGEAGT
EAGFHYRMVYIEPALIQKILGGRPLPFIPDGLSADPRLRHAAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQ
AFDYQAAERAREYIHACFMQDMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADAG
FADQSHMTRQFISRFGLSPGRWLRAIRG
>Mature_267_residues
SQQQSADWVRLAQSPSRTERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQHSLPGGTMVLHPDEIHDGEAGTE
AGFHYRMVYIEPALIQKILGGRPLPFIPDGLSADPRLRHAAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQA
FDYQAAERAREYIHACFMQDMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADAGF
ADQSHMTRQFISRFGLSPGRWLRAIRG

Specific function: Positive Regulator Of Tyna/Maoa And Feab/Pada, The Genes For 2-Phenylethylamine Catabolism. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30471; Mature: 30340

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
SQQQSADWVRLAQSPSRTERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQHS
CCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
LPGGTMVLHPDEIHDGEAGTEAGFHYRMVYIEPALIQKILGGRPLPFIPDGLSADPRLRH
CCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCHHHHH
AAQPLLKAVTDTFEPLEEEDALYDLAQTLAVVGGQRSRRQAFDYQAAERAREYIHACFMQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRMRAGERLVDIAADAG
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FADQSHMTRQFISRFGLSPGRWLRAIRG
CCHHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]