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The map label for this gene is rbsC [H]

Identifier: 152969082

GI number: 152969082

Start: 563685

End: 564707

Strand: Direct

Name: rbsC [H]

Synonym: KPN_00511

Alternate gene names: 152969082

Gene position: 563685-564707 (Clockwise)

Preceding gene: 152969081

Following gene: 152969088

Centisome position: 10.61

GC content: 59.14

Gene sequence:

>1023_bases
ATGAAATTAACGGCGGCTCCGGCCAGCGAGGGTTCCTCCTTCTTCGCTAATTTGCGGCATAAAATGCCGAAAGATACCGG
CATCTTTGTGGTGATGCTGGTGATCGCCCTGACCTTTGAAATCGCCGGCTGGTATGTTCGCGACCAGTCGTTCCTGCTCA
ATACCAACCGGCTGGTGCTGATTGTGCTGCAGGTGGCGATTATCGGCATCATCGCCGTCGGCGTCACCCAGGTGATCATC
ACCACCGGGATTGACCTCTCCTCCGGCTCGGTTATTGCCCTTGCGGCGGTGGTGGCGGCCAGCCTGGCGCAAACCTCCGA
TAGCCTGTCGCCAATGTTCCCGGCGCTGGTCAACCTGCCGGCGGTGATCCCCATTTGCGCGGGGATCGGCGTCGGCCTGC
TGTGCGGCCTGACCAATGGTTTCCTGGTGACGCGGACCGGTATCCCGCCGTTTATCGCCACCCTCGGGATGATGGTTTCG
GCGCGCGGTCTGGCGCAGTATTACACTCAGGGCAACCCGATCAGCTTCCTCTCCGACAGCTTTACGGCGATAGGCCAGGG
GGCGATGCCGGTGATTATCTTCTTCGTGATCGCCGCCGTGTTTCACATTGCGCTGAAGCATACCCGGTATGGCAAATATG
TGTATGCCATCGGCGGCAACATGACCTCGGCCAAAGTGTCCGGCATCAATGTGAATAAATATCTGGTGATCGTCTACACC
ATCGCCGGGGCGCTCTCCGGGCTGGCGGGGGTGGTGCTGGCGGCGCGCGTCAGTAGCGGCCAGTCGAGCATGGGGATGTC
CTACGAGCTGGACGCGATTGCCGCCGCGGTGATCGGCGGCAGCAGCTTAATGGGCGGAGTGGGGCGCATTACCGGCACCC
TGATTGGCGCGATGATCCTTGGCCTGATCAAAAGCGGTTTTACCTTTGTCGGCGTCGATGCCTATGTGCAGGATATTATT
AAAGGCATCATTATCGTTGCGGCGGTAACCATCGATATGCGTCGCAACCGGAAAAAACACTAA

Upstream 100 bases:

>100_bases
ATGCATGAAGGTCGTATCACCGGCATCCTGGAAAAAGACGAAGCCGACCAGGAAACCATTTTGTCGTTGGCATCCCATTG
AGGCACAGAGAATGAGTAAT

Downstream 100 bases:

>100_bases
TCTTATCAACGGGCGGCAACGGCGAAGGATGCCGTTGCCGCCCGTCCTGTCCAGAAATAAACAAAATACTCCCCGCCAGG
CTCCGCCTGTCTGTTTTGCC

Product: putative inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNRLVLIVLQVAIIGIIAVGVTQVII
TTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALVNLPAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGMMVS
ARGLAQYYTQGNPISFLSDSFTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVIVYT
IAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGAMILGLIKSGFTFVGVDAYVQDII
KGIIIVAAVTIDMRRNRKKH

Sequences:

>Translated_340_residues
MKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNRLVLIVLQVAIIGIIAVGVTQVII
TTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALVNLPAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGMMVS
ARGLAQYYTQGNPISFLSDSFTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVIVYT
IAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGAMILGLIKSGFTFVGVDAYVQDII
KGIIIVAAVTIDMRRNRKKH
>Mature_340_residues
MKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNRLVLIVLQVAIIGIIAVGVTQVII
TTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALVNLPAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGMMVS
ARGLAQYYTQGNPISFLSDSFTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVIVYT
IAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGAMILGLIKSGFTFVGVDAYVQDII
KGIIIVAAVTIDMRRNRKKH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=290, Percent_Identity=42.0689655172414, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1788471, Length=329, Percent_Identity=37.9939209726444, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1790524, Length=332, Percent_Identity=32.2289156626506, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1788896, Length=353, Percent_Identity=28.8951841359773, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI145693152, Length=283, Percent_Identity=32.8621908127208, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1789992, Length=352, Percent_Identity=30.9659090909091, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI87082395, Length=289, Percent_Identity=35.6401384083045, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=35.2713178294574, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1787794, Length=303, Percent_Identity=30.3630363036304, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787793, Length=317, Percent_Identity=27.7602523659306, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35323; Mature: 35323

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNRLVL
CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEECCCHHHH
IVLQVAIIGIIAVGVTQVIITTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALVNLP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCH
AVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGMMVSARGLAQYYTQGNPISFLSDS
HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
FTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVIVYT
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEECCEECCHHEEHHHH
IAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGAMIL
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHH
GLIKSGFTFVGVDAYVQDIIKGIIIVAAVTIDMRRNRKKH
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNRLVL
CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEECCCHHHH
IVLQVAIIGIIAVGVTQVIITTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALVNLP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCH
AVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGMMVSARGLAQYYTQGNPISFLSDS
HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
FTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVIVYT
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEECCEECCHHEEHHHH
IAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGAMIL
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHH
GLIKSGFTFVGVDAYVQDIIKGIIIVAAVTIDMRRNRKKH
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]