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The map label for this gene is fimF [H]

Identifier: 152969065

GI number: 152969065

Start: 540841

End: 541788

Strand: Direct

Name: fimF [H]

Synonym: KPN_00494

Alternate gene names: 152969065

Gene position: 540841-541788 (Clockwise)

Preceding gene: 152969064

Following gene: 152969067

Centisome position: 10.18

GC content: 55.8

Gene sequence:

>948_bases
ATGGTCAGTGGCAAAACTATCGAGTATTCAGTGAACGTCAGCCAGGCCAGTATCAACCTTGACGTCAGCGATCTCCCCAT
CGGCTCCCTGCTATACAGCTACGGAGGGATGATTATCACTAATAACGAACGCTGGGAGATCGCCTGCAGCGGCAGCGAGC
CCGGCGGGTTTCAGAGCATTGGCGGTTCCCGGGTCGGCCCGGCGGGAGACGGCAAGCCGGGGGATATCTACAGCATCGAC
CGCCTGCCGGGCATCGGCTACAGCTTTCAGATGGGGGAACAGGATGGCATTAATTTCGATCCCCTGTTCACGGCCTGGCC
TTCCGCGCCGGTATTTTCCGGCCAGCGCGCATTTCAGGCGGAGAATAAAAAACCGACCATCTATTTCTGGCGGATTGCCG
ATAACGGCGGTCTACCGCTGCCGGGCGAATATTGCCTTAATGATTACCTTGGCGATATTTATCTTGGCGGAGTACAGGCG
ATGCGCTTCAGCGTCAGCGGGCTCTGTATTCAGGTCAAATCACCCACCTGCAAGATTACTGACGACAGTAAAAACATTAA
CGTCTTCCTCGGACGGCATAACAAAACCGCATTTACCGGGCTCAACAGCACCACCGCCCCGGTTCCTTTTAACATCAACC
TGACGAACTGTGAAAATGTCGGCAGCGTGTTTATGCAGTTTAACGCGACGGTGGACAGCGCTGTCGCCGCCAACGAAGTG
ATTAAAATCGATGACCAACCTGAAGGGGCATCCGGACTTGGCGTGCAGATCCTCAGTGCCGGCGGCTCGCTGGTGCCGCT
AAACCAGGTGAGCCAGGTCTGGTCCGGGAAAAAAGGCAGTCAGACGAACTATCGTTTATCCTATCAGGCCCGCTATATCC
AGACGCAGCCCGCAGTGACTGCGGGCGAAGCGAACGCCAGCGTGACCTTCGTGGTGACTTATAACTGA

Upstream 100 bases:

>100_bases
CCGGGAATAAAGGAGAAGTAATATGAAAAAAATCATCGCATCAGGGGTACCTCTTCTGCTGGCCGGCGGGTACTGCGCTT
CGCTGTCGGCAGCGTGCCAG

Downstream 100 bases:

>100_bases
TCTGCCTGGCGGCACAGCGCCGTCAGGCATGCGCCAGTAAAGGAAACATCAACTTCCTGTCTTTAAACAGGTTTTCCTTC
TGGTCATAGACGAAGAGGAT

Product: putative fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSYGGMIITNNERWEIACSGSEPGGFQSIGGSRVGPAGDGKPGDIYSID
RLPGIGYSFQMGEQDGINFDPLFTAWPSAPVFSGQRAFQAENKKPTIYFWRIADNGGLPLPGEYCLNDYLGDIYLGGVQA
MRFSVSGLCIQVKSPTCKITDDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINLTNCENVGSVFMQFNATVDSAVAANEV
IKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVWSGKKGSQTNYRLSYQARYIQTQPAVTAGEANASVTFVVTYN

Sequences:

>Translated_315_residues
MVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSYGGMIITNNERWEIACSGSEPGGFQSIGGSRVGPAGDGKPGDIYSID
RLPGIGYSFQMGEQDGINFDPLFTAWPSAPVFSGQRAFQAENKKPTIYFWRIADNGGLPLPGEYCLNDYLGDIYLGGVQA
MRFSVSGLCIQVKSPTCKITDDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINLTNCENVGSVFMQFNATVDSAVAANEV
IKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVWSGKKGSQTNYRLSYQARYIQTQPAVTAGEANASVTFVVTYN
>Mature_315_residues
MVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSYGGMIITNNERWEIACSGSEPGGFQSIGGSRVGPAGDGKPGDIYSID
RLPGIGYSFQMGEQDGINFDPLFTAWPSAPVFSGQRAFQAENKKPTIYFWRIADNGGLPLPGEYCLNDYLGDIYLGGVQA
MRFSVSGLCIQVKSPTCKITDDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINLTNCENVGSVFMQFNATVDSAVAANEV
IKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVWSGKKGSQTNYRLSYQARYIQTQPAVTAGEANASVTFVVTYN

Specific function: Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Involved in the integration of fimH in the fimbriae [H]

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790773, Length=146, Percent_Identity=33.5616438356164, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081805, Length=144, Percent_Identity=34.7222222222222, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787781, Length=141, Percent_Identity=34.0425531914894, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87082421, Length=145, Percent_Identity=31.0344827586207, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 33636; Mature: 33636

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSYGGMIITNNERWEIACSGSEPGGFQSI
CCCCCEEEEEEEEEEEEEEEEHHCCCHHHHHHHHCCEEEECCCEEEEEECCCCCCCCHHC
GGSRVGPAGDGKPGDIYSIDRLPGIGYSFQMGEQDGINFDPLFTAWPSAPVFSGQRAFQA
CCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCHHEEC
ENKKPTIYFWRIADNGGLPLPGEYCLNDYLGDIYLGGVQAMRFSVSGLCIQVKSPTCKIT
CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCEEECCEEEEEEEECEEEEEECCCEEEEE
DDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINLTNCENVGSVFMQFNATVDSAVAANEV
CCCCCEEEEEECCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHCCCCE
IKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVWSGKKGSQTNYRLSYQARYIQTQPAVT
EEECCCCCCCCCCCEEEEECCCCEEEHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCEE
AGEANASVTFVVTYN
ECCCCCEEEEEEEEC
>Mature Secondary Structure
MVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSYGGMIITNNERWEIACSGSEPGGFQSI
CCCCCEEEEEEEEEEEEEEEEHHCCCHHHHHHHHCCEEEECCCEEEEEECCCCCCCCHHC
GGSRVGPAGDGKPGDIYSIDRLPGIGYSFQMGEQDGINFDPLFTAWPSAPVFSGQRAFQA
CCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCHHEEC
ENKKPTIYFWRIADNGGLPLPGEYCLNDYLGDIYLGGVQAMRFSVSGLCIQVKSPTCKIT
CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCEEECCEEEEEEEECEEEEEECCCEEEEE
DDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINLTNCENVGSVFMQFNATVDSAVAANEV
CCCCCEEEEEECCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHCCCCE
IKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVWSGKKGSQTNYRLSYQARYIQTQPAVT
EEECCCCCCCCCCCEEEEECCCCEEEHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCEE
AGEANASVTFVVTYN
ECCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2890081; 7610040; 9278503; 1970114 [H]