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The map label for this gene is sfmC [H]

Identifier: 152968850

GI number: 152968850

Start: 312191

End: 312889

Strand: Direct

Name: sfmC [H]

Synonym: KPN_00276

Alternate gene names: 152968850

Gene position: 312191-312889 (Clockwise)

Preceding gene: 152968849

Following gene: 152968851

Centisome position: 5.87

GC content: 43.92

Gene sequence:

>699_bases
ATGAAAGCGTTACTTGTTTTATCTTTAATGACGTCATGTTTGATTTTTTCAATAAATAGTCATGCGACGGTTTCGGTCGG
CGGGACCCGCCTGGTTTTTCATGGTGATGAAAAAGAAGCATCGATTACTGTAAGCAATACGGACAAGGGCATTCCCGTTC
TTATTCAGTCATGGGTGGACGAAGGGGAGAATAGCAAAGCTAAGGCTCCGTTTATGATTACCCCACCATTGTTTCGTCTT
GAGCCCGGCCAGGACAATACTTTGCGCGCGGTTTTTACGGGGGCAAACCTTGCGCAAGACCGTGAGTCATTATTCTGGCT
AAACATTAAGACGATCCCTTCAGTTAAAAAAAACGAGGTACAGGCAAATACATTGCAGTTGGCGATCAAAAAAAGGCTGA
AATTTATTTATCGTCCTTCAGCTGTAAAAGGCTTGCCTGAAGAAAACGCGGATAAACTTGTCTGGAAAAAAATCGGTAAC
CAGATTCAGGTGACTAACCCAACGCCGTTTTACATGAACTTCAGCGTCATTACGGTGGGCGGAAAGACGTTTAAACCCAC
CTTGCCAGAGCAGACCTATGTGGCACCAGCAACAGAACGGCTATTTACCATTCCTGCAGGAGCAGTCGGTAACACTATTA
GCTGGAAAATAATTAACGATTACGGTACGAGTGGCAAAGAGTTTCACTCAAAATATTAA

Upstream 100 bases:

>100_bases
CACCGCAGGCGCGGCTAACGCCGTCGCCCAGGTAAACATCTCTTATATGTAATTTTTGACATGCAGCGGAGGTGGTAACA
CCTCCGCTACCGGAGTATTA

Downstream 100 bases:

>100_bases
TTTCTTCTGATTACATCTGATTAATGGGTATGGAATTTTGGGTCAGTTCAATTTCAATATGAAATATGCATGCCTCTTGA
TGATGTCTGCGCTATTCAAT

Product: putative fimbrial chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKALLVLSLMTSCLIFSINSHATVSVGGTRLVFHGDEKEASITVSNTDKGIPVLIQSWVDEGENSKAKAPFMITPPLFRL
EPGQDNTLRAVFTGANLAQDRESLFWLNIKTIPSVKKNEVQANTLQLAIKKRLKFIYRPSAVKGLPEENADKLVWKKIGN
QIQVTNPTPFYMNFSVITVGGKTFKPTLPEQTYVAPATERLFTIPAGAVGNTISWKIINDYGTSGKEFHSKY

Sequences:

>Translated_232_residues
MKALLVLSLMTSCLIFSINSHATVSVGGTRLVFHGDEKEASITVSNTDKGIPVLIQSWVDEGENSKAKAPFMITPPLFRL
EPGQDNTLRAVFTGANLAQDRESLFWLNIKTIPSVKKNEVQANTLQLAIKKRLKFIYRPSAVKGLPEENADKLVWKKIGN
QIQVTNPTPFYMNFSVITVGGKTFKPTLPEQTYVAPATERLFTIPAGAVGNTISWKIINDYGTSGKEFHSKY
>Mature_232_residues
MKALLVLSLMTSCLIFSINSHATVSVGGTRLVFHGDEKEASITVSNTDKGIPVLIQSWVDEGENSKAKAPFMITPPLFRL
EPGQDNTLRAVFTGANLAQDRESLFWLNIKTIPSVKKNEVQANTLQLAIKKRLKFIYRPSAVKGLPEENADKLVWKKIGN
QIQVTNPTPFYMNFSVITVGGKTFKPTLPEQTYVAPATERLFTIPAGAVGNTISWKIINDYGTSGKEFHSKY

Specific function: Required for the biogenesis of sfmA fimbriae. Binds and interact with sfmH [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786743, Length=226, Percent_Identity=38.4955752212389, Blast_Score=160, Evalue=5e-41,
Organism=Escherichia coli, GI1790771, Length=221, Percent_Identity=37.10407239819, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789532, Length=225, Percent_Identity=37.3333333333333, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1787171, Length=224, Percent_Identity=33.4821428571429, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1786333, Length=231, Percent_Identity=32.4675324675325, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87081806, Length=227, Percent_Identity=33.920704845815, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786936, Length=214, Percent_Identity=29.9065420560748, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788677, Length=208, Percent_Identity=28.8461538461538, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788428, Length=231, Percent_Identity=27.2727272727273, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082203, Length=232, Percent_Identity=23.7068965517241, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25659; Mature: 25659

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALLVLSLMTSCLIFSINSHATVSVGGTRLVFHGDEKEASITVSNTDKGIPVLIQSWVD
CCHHHHHHHHHHHHEEECCCCEEEEECCEEEEEECCCCCEEEEECCCCCCCHHHEEHHHC
EGENSKAKAPFMITPPLFRLEPGQDNTLRAVFTGANLAQDRESLFWLNIKTIPSVKKNEV
CCCCCCCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCC
QANTLQLAIKKRLKFIYRPSAVKGLPEENADKLVWKKIGNQIQVTNPTPFYMNFSVITVG
HHHHHHHHHHHHHHHEECCHHHCCCCCCCHHHHHHHHCCCEEEECCCCCEEEEEEEEEEC
GKTFKPTLPEQTYVAPATERLFTIPAGAVGNTISWKIINDYGTSGKEFHSKY
CCEECCCCCCCEEECCCCCEEEECCCCCCCCEEEEEEEECCCCCCHHHCCCC
>Mature Secondary Structure
MKALLVLSLMTSCLIFSINSHATVSVGGTRLVFHGDEKEASITVSNTDKGIPVLIQSWVD
CCHHHHHHHHHHHHEEECCCCEEEEECCEEEEEECCCCCEEEEECCCCCCCHHHEEHHHC
EGENSKAKAPFMITPPLFRLEPGQDNTLRAVFTGANLAQDRESLFWLNIKTIPSVKKNEV
CCCCCCCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCC
QANTLQLAIKKRLKFIYRPSAVKGLPEENADKLVWKKIGNQIQVTNPTPFYMNFSVITVG
HHHHHHHHHHHHHHHEECCHHHCCCCCCCHHHHHHHHCCCEEEECCCCCEEEEEEEEEEC
GKTFKPTLPEQTYVAPATERLFTIPAGAVGNTISWKIINDYGTSGKEFHSKY
CCEECCCCCCCEEECCCCCEEEECCCCCCCCEEEEEEEECCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]